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authorV3n3RiX <venerix@redcorelinux.org>2021-01-08 11:28:34 +0000
committerV3n3RiX <venerix@redcorelinux.org>2021-01-08 11:28:34 +0000
commit24fd814c326e282c4321965c31f341dad77e270d (patch)
tree033d63b33c21a3209964ab56005bb9bdd523630d /sci-biology
parent129160ec854dca4c3fedb5bcfbcb56930371da0f (diff)
gentoo resync : 08.01.2021
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/Manifest.gzbin22479 -> 22484 bytes
-rw-r--r--sci-biology/fasta/Manifest2
-rw-r--r--sci-biology/fasta/fasta-36.3.5e.ebuild4
-rw-r--r--sci-biology/mafft/Manifest2
-rw-r--r--sci-biology/mafft/mafft-7.305.ebuild4
-rw-r--r--sci-biology/mira/Manifest2
-rw-r--r--sci-biology/mira/mira-4.0.2.ebuild4
-rw-r--r--sci-biology/stride/Manifest2
-rw-r--r--sci-biology/stride/stride-20011129-r1.ebuild4
9 files changed, 12 insertions, 12 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 41afea6d2eca..0bdf90f90016 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
Binary files differ
diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest
index 3a6a9eddf1fd..6cdf5074f707 100644
--- a/sci-biology/fasta/Manifest
+++ b/sci-biology/fasta/Manifest
@@ -1,4 +1,4 @@
AUX fasta-36.3.5e-ldflags.patch 2781 BLAKE2B e6d4e0984b4dadfc9d38504ab215d769084edc6c79cfe641b6b3fba8264a40add1665027295ec4afa19d26277036bfe1a5103ecdf72ef91a1139542ac8272954 SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7
DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812
-EBUILD fasta-36.3.5e.ebuild 1643 BLAKE2B 43c8f7f4d2220aa7c028bba399241f0f024faa78b6743178793f647f6b494c749fb5ccb164cd07071b2ba28cfd60e61c75bb46c5f23556de131df5f0be60616b SHA512 caffe54bbfd73f76e3ef9adff0843103362f3945986a4b51ac722a8ea893de24994142e0995c13d9d1e6d846547a37427b643b11d04794f815a162d3ea03bef0
+EBUILD fasta-36.3.5e.ebuild 1632 BLAKE2B 847d914602ffd07f31f4d02a592fb3a8ccfe5b0f3601bc5f7ba05cb5c0ca475834e1b84e0710ae8dcc967e12fa246be9301cde0e148c73a8c754399ae11ec445 SHA512 43cea919f46d031c4a56729e57236bde05eff8f1b869fb40ddad60386a38357cd605a57b02de76adc858f5476c6d06b3d37312cb5fc99e53408744848b476bff
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/fasta/fasta-36.3.5e.ebuild b/sci-biology/fasta/fasta-36.3.5e.ebuild
index 392ee4c76410..6ac8d96b424f 100644
--- a/sci-biology/fasta/fasta-36.3.5e.ebuild
+++ b/sci-biology/fasta/fasta-36.3.5e.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -11,7 +11,7 @@ SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}36/${P}.tar.gz"
LICENSE="fasta"
SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="debug cpu_flags_x86_sse2 test"
RESTRICT="!test? ( test )"
diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
index 974e08b0ca57..3056fbcb330b 100644
--- a/sci-biology/mafft/Manifest
+++ b/sci-biology/mafft/Manifest
@@ -1,4 +1,4 @@
AUX mafft-7.305-fno-common.patch 185 BLAKE2B 1230b838fa93b560fe0b0d9dd124cec2daf92d1dbcd75e371af92cc070bf62cea23c7c9ee3d87798de70911e4c316e444c875e79b3cf93f757b7a6fdfe2e279b SHA512 fe9de41eaea3bf799065fac88b336ec45af3c5b4d7d5272a477d99165b88c27f7e7765908e7955eaa0a74bb59df10a0ab77b822fd29bebca601d124938f3489d
DIST mafft-7.305-without-extensions-src.tgz 458448 BLAKE2B 5d5fa86e6faa472182c5c48f42056d81bbf545db56426969ff44a24146d4189a7650e85ea6e9fa8b40bb613392bf53bc5dea26012a86eb873c18bee91e6fdc41 SHA512 2aa351dd9b329024f183642cd98287239d12a00a2a65937e072560cba54925bed1fab19fafc734d9a5048ff85151560193ddb0796e0d7510d921fafc4553ebb9
-EBUILD mafft-7.305.ebuild 2067 BLAKE2B 679f6b2270aa60b51416b4f1cf3322a217db912d98a84397134064035b21151b9a20c5ab387f0d671365f8c8abecee924cade70ade9a5174c1e24f8e3d08a7c1 SHA512 d3781c854315146303f8702b4f80ce0ce1de9e543a8e85fb267be27b422a8eeba716f21353853d4e618ae89635bb993f12f446c625a7e6b5e79807b967202b01
+EBUILD mafft-7.305.ebuild 2056 BLAKE2B 4d6599082401880abfa483f5fc23b9379dfca2fd410d948138b0005fcd43737b0dd92777d19b606a9c9ef77a03fdb667122eb8d56d053753d3e83452d0a24a6d SHA512 a6fc3af370b4e677d49372aa7c3908e33574cf7eeaf7cb02025c89b8654152a8cb622850d0f28f880f27cbb3e4743933798c9d843060383339c56ddb6b7792c5
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/mafft/mafft-7.305.ebuild b/sci-biology/mafft/mafft-7.305.ebuild
index f4863892571a..105b5ce9883e 100644
--- a/sci-biology/mafft/mafft-7.305.ebuild
+++ b/sci-biology/mafft/mafft-7.305.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -13,7 +13,7 @@ SRC_URI="https://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="threads"
S="${WORKDIR}/${P}${EXTENSIONS}"
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index b934891dfcbd..bd2f1f6ab348 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -3,5 +3,5 @@ AUX mira-4.0.2-cmath.patch 295 BLAKE2B 30892b3a519682db7e04b1a0169c4018d7f4dd4e3
AUX mira-4.0.2-cout.patch 735 BLAKE2B d386a704829b7f3264ee69d55d7451a5479a9d121e49cbd8d9322c9a27a065073076608569d169982784fcc6cc4ae4423712d15d1c4d642a6b8fd0dd7d5fe3a3 SHA512 9d1aa493d20481d0a7e3eaefba36dc29d7903f70c9a445b6e0ea478d04124e8a81de37c437f0fb28c0a395562db7e78217cf09e500fd4a1f2a1f929c1d4d2a5a
DIST mira-4.0.2.tar.bz2 10368046 BLAKE2B cc84c6c13c8024409634ccafd103be8a4f2a9e27fa7f19d2ef401393db9e8063a6fac2f21cd25dfe58e90aee8cf38983369d928241f9bc65e78da0e95fa41d3b SHA512 a7f9845de207cefb87ffa652f4f6b9b85735ef22eeb29b456e4d946ba1675e7dd2c78abb2da56f11fddcb699f5c0700a08ce298196ce1a8e586a758a8d3bdc7e
DIST mira_3rdparty_06-07-2012.tar.bz2 31656 BLAKE2B 7e952d96e9073acd8ab1d1fc7c51c37f6526287d31698c5090500d421147285b535e8cab7e49f4e51a5634c901d1cd969206b1727e683d3fcebdc195399e3589 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b
-EBUILD mira-4.0.2.ebuild 2579 BLAKE2B 32dfbe06949674e8932bd87453bbfafe8b969f459f4512e82e92754e336673e588bee13bbcb6c95879c799a469adb8ce9894e18100e141acd11a28c85dcbf169 SHA512 94c1b9e0cf23495ef36ee9bec1aa4770e5d97011de06fc92f6b9d51d0388d7c9ded7c8fb9d3d2488c30ff29b1f037ac816e095ebe981a1e00fcde5e08bc29dfe
+EBUILD mira-4.0.2.ebuild 2565 BLAKE2B 63493cce65380db11e2dca8371894780095e56d5cea1d23891664925e3587ac4ee8ee828309f126d442078d186bafde88edec2d0fa0f8b14c4f8f6858c34f533 SHA512 0c0eee188139c72c816fd50634e3d3bc48d5737e081929d5c154468bb0250c382ca4c4499cb1ee8740f7f5f78ccc8e9eeaed8c379205aeb10afc22d0abe8435e
MISC metadata.xml 355 BLAKE2B 2557fbd5c3427ccced7fc6d233954a3e9d4297c0bec17158997f4f7fb490b525235ae27fff1ed19113b596de77a23518505e20531c7e40020e3f54932f5d9e6f SHA512 9d9037805b94622cb468553fa27c948de2849ac4c6dc1eafae8c3261554b5e97b631fe77e4e589eff613822d316b2843bcab0c47547b202651c8a804a516554e
diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild
index f5ac6cfe70f5..ddd64d3cd5e9 100644
--- a/sci-biology/mira/mira-4.0.2.ebuild
+++ b/sci-biology/mira/mira-4.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -20,7 +20,7 @@ S="${WORKDIR}"/"${PN}"-"${MY_PV}"
SLOT="0"
LICENSE="GPL-2"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE="doc"
CDEPEND="
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 4230976b6793..df1b9f08696f 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,5 +1,5 @@
AUX stride-20011129-fix-buildsystem.patch 807 BLAKE2B df077f9234808abe3a9346af6c4a8bde92812cc9f782ad37b75b060166b35686cbcdc2f4b12c26263127dbd3c488660bb2cf70bc553c267cb3e9f70eba68082d SHA512 2afba4707d8371da1fc79c5bfa6f476ac76682d67e52287462eabfcecd394f89a9fe68810045098c48107ed7f33b8c44c566f609c647f71a7918375cfc9dc220
DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1
-EBUILD stride-20011129-r1.ebuild 822 BLAKE2B 34f7f410901818525c884457031a5ed16a1a467ca2b406db76102560ba94458693dc7fb7822b3c5d4fccc75f42a31b794b3f18ce726a2abc928ce8082301d691 SHA512 0fc9734abddfbbb22727c1de5021b7c544ce4a9d03e53c567d9f1eb1133936058eca9c1a862e6d964695e04d985349cd7698a27e63646f5a8c4658d8e18c626a
+EBUILD stride-20011129-r1.ebuild 811 BLAKE2B 74e3b7bc200c6ecbc87b1be3ca6127e6d60ae709ed731986710e4613ef9d5ff04f8f7e020376e8d4261277c0a88944ac7516d077260b17de013f3885a1202da4 SHA512 03a90b1ec0f6c40469737637fbd68821139e83b286fe9c535c63e7f36b1e9dd03a4808ac8e5c5b314dd1a7d14614692eab8eed5a7c800568810e3e4eee093fbe
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index 678887de925e..bd815dbf3419 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -13,7 +13,7 @@ SRC_URI="
LICENSE="STRIDE"
SLOT="0"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
RESTRICT="mirror bindist"
S="${WORKDIR}"