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authorV3n3RiX <venerix@redcorelinux.org>2019-07-19 22:05:27 +0100
committerV3n3RiX <venerix@redcorelinux.org>2019-07-19 22:05:27 +0100
commit121ed4eec41fbf03e1998d09eede1bf449da63b9 (patch)
treece9341d77d1507f67d4a3a1472da9011b5baa0a8 /sci-biology
parentdd762ff83c330186ee2ede002e08b2f780cddd51 (diff)
gentoo resync : 19.07.2019
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/ApE/Manifest2
-rw-r--r--sci-biology/ApE/metadata.xml1
-rw-r--r--sci-biology/Manifest.gzbin24631 -> 24628 bytes
-rw-r--r--sci-biology/bedtools/Manifest2
-rw-r--r--sci-biology/bedtools/bedtools-2.26.0.ebuild4
-rw-r--r--sci-biology/poa/Manifest2
-rw-r--r--sci-biology/poa/poa-2-r1.ebuild4
-rw-r--r--sci-biology/vcftools/Manifest2
-rw-r--r--sci-biology/vcftools/vcftools-0.1.14.ebuild4
9 files changed, 11 insertions, 10 deletions
diff --git a/sci-biology/ApE/Manifest b/sci-biology/ApE/Manifest
index 544933817063..c37acd2efdb8 100644
--- a/sci-biology/ApE/Manifest
+++ b/sci-biology/ApE/Manifest
@@ -1,3 +1,3 @@
DIST ApE-2.0.7.zip 318454 BLAKE2B 420001d298b8c6b1bc26247446aafe8c3adcf6477ebabc689219c094d46fe5e836d216a493169bac0ccd9c3b669d9421edb3b023a1a39cf74d32a81df09e66d2 SHA512 073e3f96badf4888c10a7c7eb453a3775d5bb9136b0bd836d37d1be784847f887e0c68b37325f430eebfb90c2d94021f10d4e8ede92de89b1ab1ddc1ffdbc254
EBUILD ApE-2.0.7-r1.ebuild 1170 BLAKE2B 55b1b7e157dc77bdf90d3de47ef02325573af64887bd7959fcd97a474f49d610afdf51106c1a6c059d7c24f4a20ddfd7054fb2e5b032ba22e9f3af81f6183dc6 SHA512 7260638810e5ef22da0b07f05e3046451e3b3a581706326caa073ff49255a36770cd622cbd0c428010fb39950b54248aa6112f8aa525260d8ebd312bc21d75ab
-MISC metadata.xml 139 BLAKE2B b4a59c22790dfec3fbcfaea41ef363401766736b68a85bedae00e1944d0a848aa97104c2f34244c0fe7b6363029281f965fc1b3545301d341cda371eaa976274 SHA512 8be912ace7468a4396eb1da00a9785030a8ce35da4357a01591876a1056fd45e44da65de2af3e1eb0506ce6551714962c40c3ae5a3aefa2ad231de35af2519be
+MISC metadata.xml 165 BLAKE2B ed7e2ebe9f71491aa6163627bdb6606e798b98ca85c053b50442182a245074a9e09b290835e7c8fb4a10e4e8227c16ec306fd16f337cb66904095d864e698e8b SHA512 bebe508b4e0a7ca4a046f9befd3d7ddb702756024756a5f0d9fb5ace5fe3f5a98f9d42afda4597b7d1338607b8d43e41c8fcd6d20d31da3ebad2b420edd2cb59
diff --git a/sci-biology/ApE/metadata.xml b/sci-biology/ApE/metadata.xml
index 097975e3adc2..58f638b2ac3e 100644
--- a/sci-biology/ApE/metadata.xml
+++ b/sci-biology/ApE/metadata.xml
@@ -1,4 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
+ <!--maintainer-needed-->
</pkgmetadata>
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index ab67c2795ecd..f1df43a13097 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
Binary files differ
diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest
index 3e0a0a3f796c..4c404331ab52 100644
--- a/sci-biology/bedtools/Manifest
+++ b/sci-biology/bedtools/Manifest
@@ -1,4 +1,4 @@
DIST bedtools-2.26.0-fix-buildsystem.patch.bz2 2584 BLAKE2B 550cd03a0c01217adb347587cb75bdc2ffa4e03ad6ad66535b22d423e6f030e237b0ccfd3d1bd3e434cb9cc2a007971517f03e9ceabc08b63c725bac786e23e8 SHA512 0a7835f560102ce6183736faea6a2be05609b69bb8efdaf98b9d7057e24aa1ebe9d6067118b95c76470ca341b151970db532094ee70ca333075aed7c47509ba3
DIST bedtools-2.26.0.tar.gz 19939711 BLAKE2B 8f6ee6ed755c638dbdd0a4750a5348c28a865f36eaafef6160e90f62912cb0a6b719713935ba68dad74bc591e3f37db49eab54a06a316dc00e4ec82a5dca71dc SHA512 b224adcc09322e90ef389e8172e14572b68f164185fe1a8814db1c47bb4f15656ca8c0ff0061017eb54d76affbe0d0f5793d893b8ab489b56eaf0818616a5def
-EBUILD bedtools-2.26.0.ebuild 945 BLAKE2B 05e926ee12cb2ad650d611990e8d9d8bca0b52fdb24ef90cc162c4c891dfd96b3eec31c5cdf873d518540015f1d7daa9ffe5791ef850fcc911fb8696f56e55c1 SHA512 ee68e91063f9f310a93af8dc3fcfc9c359636ba24b70080df3b5fe89ce40cd3877dfa0f75fea018277181fdf49fb9681378a963904d9f01f89b437cc2c311d07
+EBUILD bedtools-2.26.0.ebuild 942 BLAKE2B ad27f9a2e62216a68c07dd0021f72240b7a1c296b87b13d49adb38e2bff050b8ef82dbe9d1e0cb81bcd9402915e7f33cbda10902748aae707e780cb177268e07 SHA512 61a3b76cfa50463cc49e58dbeccb3cbdf2d7315b780547ae323c7298a1a422a016bed044be21dfc5711c1393db135426ce72f49a048cf41bb9e3c780692bb0dd
MISC metadata.xml 761 BLAKE2B 35d57919e32a4b8bd6070ab5a513f62578394d43098d9e7b9b0765fd57d684c049dad9ec1b315044518bf01535d505e9d9d3fee540308df40c0b70886db8e49f SHA512 2d98b9559ef00bee2b741f9e7d22645442ba161f3cadb32c6366b39fcd71b6eac52afd210f59ae709a15cba36a2d0a47341345740e0cab6a1f6bfdffed064770
diff --git a/sci-biology/bedtools/bedtools-2.26.0.ebuild b/sci-biology/bedtools/bedtools-2.26.0.ebuild
index 25f91921363a..c759b395f587 100644
--- a/sci-biology/bedtools/bedtools-2.26.0.ebuild
+++ b/sci-biology/bedtools/bedtools-2.26.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -14,7 +14,7 @@ SRC_URI="https://github.com/arq5x/${PN}2/releases/download/v${PV}/${P}.tar.gz
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~x86 ~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE="test"
DEPEND="${PYTHON_DEPS}
diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest
index 214e47504fcc..2c6ed6e80a62 100644
--- a/sci-biology/poa/Manifest
+++ b/sci-biology/poa/Manifest
@@ -1,4 +1,4 @@
AUX 2-respect-flags.patch 743 BLAKE2B f4da40ae90b7304520232cc9c2d61a3eecaac6ba1b9b886b29e473b1df8766286e3fd89874e2e836b9ddcd91f4bffe276ad74c1b6d073af3c1ca91e540f96c30 SHA512 496415d501040057155ba2ba261564fc00dc764626c8d41081f5463b0b40f9eae978bb8a81db15cf90f193c4ca9fe8725a2876ed175e15d37a983196b70e192f
DIST poaV2.tar.gz 62612 BLAKE2B 92f7b2926dd7fc93745411fc04c8dd3380c32e3e87cf89afa81aefe787a1aa0e7a416d08809cce531a21d5118398a9474a751a742ee1fca47e83bd907444e9c0 SHA512 2a54b025f0a74ff4c01828f3e4b9e8e135bffe26d08f651f981bc95a64196173b5d887ef988a25c1f5fbf89333b4771622d5dc93946d66e7ec9abacb6167595c
-EBUILD poa-2-r1.ebuild 932 BLAKE2B 8579d1f62174aa1e59533a3a39db47616295686a920794ee65058f86e1694b3dc04dea9c389530dec72dc1ce813b955a94eb6aa2da8fcd43ef3c1fd7f88b3824 SHA512 f371f3d321065905ea469b9473c40b000de43f62c3eac78e2ea9e5e3ec03d2dfa21083267be1159570ddecde325400d1c381a100831b5f56086e5465acf6e29a
+EBUILD poa-2-r1.ebuild 929 BLAKE2B fa75054c3c89b6ca46af50d85e0e12d654e19b5fa717c0a8d0720468b41198d3b67a8bb90ade0eac17b8fb3205f71bc2109a8b6a9a585f26a4c3d342af2c05fa SHA512 09fd7b6f965e33cd2c803a520309fbc031da5048e48e9831042c524152001684f2916e7a23ad6baa6f20498611aabe56dfd3d37754ecbac45c1c9e2f37742f22
MISC metadata.xml 347 BLAKE2B f003b9e0541ffd38d84b2daf8b4df59bfbec1510ae162ac42af1cb1cb110f19297074d61b9b84d71441a0ceba9acbd38123db467e8500c482165fcd6c7e7b90b SHA512 8610e747bbc86428757f77ed688520cdd9efeabc08e08f99ce74d98e7763f3f8cb7648b1eea01bc4db79ae16a650cb119b82022d1ac41e8fcbd6a6b40385e580
diff --git a/sci-biology/poa/poa-2-r1.ebuild b/sci-biology/poa/poa-2-r1.ebuild
index c53fcd5f5f24..efee14d1dfd6 100644
--- a/sci-biology/poa/poa-2-r1.ebuild
+++ b/sci-biology/poa/poa-2-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -14,7 +14,7 @@ SRC_URI="mirror://sourceforge/poamsa/${MY_P}.tar.gz"
# According to SF project page
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~x86 ~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE="static-libs"
S="${WORKDIR}/${MY_P}"
diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest
index d5e02ef1ffd5..3b3127ff44d4 100644
--- a/sci-biology/vcftools/Manifest
+++ b/sci-biology/vcftools/Manifest
@@ -1,4 +1,4 @@
AUX vcftools-0.1.14-buildsystem.patch 1159 BLAKE2B 9eaa626c82b4d23e75f2d31ce31c6161996eb743efbdcb81ad4c3ba306b76a710c4b22670d68178da1b7d2e048d02aea44132f3009d5792dcf248368b53c3482 SHA512 838cade29bbeeee090ea52f546c37b68eee868f3329ceccb710da0dbcf0f14e1b18dcc7b05ceefdbf72d400f450374389649f56fc6981bd86f6e176469b054ea
DIST vcftools-0.1.14.tar.gz 342369 BLAKE2B 14be867c0be41767e2c97c8be212f3cff495c1cb6699294fb8a26ac491901599cd1e400cb80c6d609dce36584ee5defdb3b3652657bd127e0c67c5b29a842cc5 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7
-EBUILD vcftools-0.1.14.ebuild 870 BLAKE2B 8c428027293a1ee1560fadd2f79f4bc69dcc499d94d7ac0cc47a563f814061b1d01b4f028ac903dfbd48a3e7b1f41413a66b119868dec41f7c4c8227e3e1b46e SHA512 9b31b758a2fc70507b8060ca2aac6207e0fb3833426ba3f8bca63bff81952828f36c94b4a2e4b4476f8d9c8c0663b2b8ae437a7b50178c94e80b3d8a8b53b42c
+EBUILD vcftools-0.1.14.ebuild 867 BLAKE2B f25ccc182927cd888c548f4eeb120c526716fc759dc7b8081baf76b9f4cd3a404a2828168577000ff816b02aa8d3e6fec52d883fdc2e6f2ec40f1a9712d024d1 SHA512 260555d8964cf329fe3710547b6ddb5600674525703d0b802d18c2a41d02271ff77c56c4d49bf9fb67966bce76a3d6addc88c5a1e86859425bf0574beecc2c34
MISC metadata.xml 408 BLAKE2B bc88536408660b74dbe9183850f853f19d123852d6e56845e9d6c5249f5fcff58e205751f70e8b22c9032eaea5d4ea9fac371376ce7725da151aacb8d6c7d5ea SHA512 637b53b7fc140cfde69bd0e39ee1e942a86a3fb77934946e942e12ca65cf01a8c3559d606ab3131ffc762aa3508fb3ab60148b4aaee28b60bc6d97cb8dd00f3e
diff --git a/sci-biology/vcftools/vcftools-0.1.14.ebuild b/sci-biology/vcftools/vcftools-0.1.14.ebuild
index baa5f7c32ea5..7b386453ae25 100644
--- a/sci-biology/vcftools/vcftools-0.1.14.ebuild
+++ b/sci-biology/vcftools/vcftools-0.1.14.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -11,7 +11,7 @@ SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz"
LICENSE="LGPL-3"
SLOT="0"
-KEYWORDS="~x86 ~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE="lapack"
RDEPEND="sys-libs/zlib