reinit the tree, so we can have metadata

1 files changed, 72 insertions, 0 deletions

diff --git a/sci-biology/wise/wise-2.4.0_alpha.ebuild b/sci-biology/wise/wise-2.4.0_alpha.ebuild
new file mode 100644
index 000000000000..3d4f0955d848
--- /dev/null
+++ b/sci-biology/wise/wise-2.4.0_alpha.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit eutils toolchain-funcs versionator
+
+DESCRIPTION="Intelligent algorithms for DNA searches"
+HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc static-libs"
+
+RDEPEND="~sci-biology/hmmer-2.3.2"
+DEPEND="
+	${RDEPEND}
+	app-shells/tcsh
+	dev-lang/perl
+	virtual/latex-base"
+
+S="${WORKDIR}"/${PN}$(delete_version_separator 3)
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-glibc-2.10.patch \
+		"${FILESDIR}"/${P}-cflags.patch
+	cd "${S}"/docs || die
+	cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die
+	cat wise2api.tex temp.tex apiend.tex > api.tex || die
+	epatch "${FILESDIR}"/${PN}-api.tex.patch
+}
+
+src_compile() {
+	emake \
+		-C src \
+		CC="$(tc-getCC)" \
+		all
+	if use doc; then
+		cd "${S}"/docs || die
+		for i in api appendix dynamite wise2 wise3arch; do
+			latex ${i} || die
+			latex ${i} || die
+			dvips ${i}.dvi -o || die
+		done
+	fi
+}
+
+src_test() {
+	cd "${S}"/src || die
+	WISECONFIGDIR="${S}/wisecfg" emake test
+}
+
+src_install() {
+	dobin "${S}"/src/bin/* "${S}"/src/dynlibsrc/testgendb
+	use static-libs && \
+		dolib.a \
+			"${S}"/src/base/libwisebase.a \
+			"${S}"/src/dynlibsrc/libdyna.a \
+			"${S}"/src/models/libmodel.a
+
+	insinto /usr/share/${PN}
+	doins -r "${S}"/wisecfg
+
+	if use doc; then
+		insinto /usr/share/doc/${PF}
+		doins "${S}"/docs/*.ps
+	fi
+	newenvd "${FILESDIR}"/${PN}-env 24wise || die "Failed to install env file"
+}