diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2019-12-15 18:09:03 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2019-12-15 18:09:03 +0000 |
| commit | 7bc9c63c9da678a7e6fceb095d56c634afd22c56 (patch) | |
| tree | 4a67d50a439e9af63947e5f8b6ba3719af98b6c9 /sci-biology/shrimp | |
| parent | b284a3168fa91a038925d2ecf5e4791011ea5e7d (diff) | |
gentoo resync : 15.12.2019
Diffstat (limited to 'sci-biology/shrimp')
| -rw-r--r-- | sci-biology/shrimp/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-2.0.1.ebuild | 54 |
2 files changed, 0 insertions, 56 deletions
diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest index c1e3472dfb7e..6a5d38227ddb 100644 --- a/sci-biology/shrimp/Manifest +++ b/sci-biology/shrimp/Manifest @@ -1,5 +1,3 @@ -DIST SHRiMP_2_0_1.src.tar.gz 158535 BLAKE2B 85b5462e812bece6a9ad51044bfeb823082e41ee66f313e0f7f621a29bfe5384d640278fa90ac102f476bef1538b0c7e1965dae7c1b877426b0d16f147a1e6ac SHA512 1cb5d46d59102502acb26c33f1d5537644268704145f6e2ae7428aeaba6681cf1e63f7924d8ee696431675f2c4627da46fd0171f25bbb3296d247339c2d709eb DIST SHRiMP_2_2_3.src.tar.gz 4596867 BLAKE2B 64e485b8e2524062c11c581bbcac426800c9f42f61da467378dbfd3add63f721a9da9c04df61bde3704e654a20395e799e89fc5e47129b1d3f5bc93f960470fa SHA512 029179aeeb317194b998c29aa91d1d2ce5ccbc6f9ad4a1043d1e5fc75d3344c2f39500ab07e8389c09fa179f0c9b59afee22691bc4eb5d396777f4e0fe25f2d5 -EBUILD shrimp-2.0.1.ebuild 1279 BLAKE2B f6606ff9c467de94228185c483db4da8d02784a5cfb0c8c1ce93ff56971e257836470c202bbeb2f85e598e3881bba81153448d5e9604bebe065110f54b8cb8fc SHA512 d16226d78b627809be5dc8b5fb39e552a71ceb6a8834ad68650fd9d3c69b425ee2e29a56f1e9b1b59e56f43a149169cc75c6694fe35c18ebc052fa7d30b6902d EBUILD shrimp-2.2.3.ebuild 1818 BLAKE2B 4878f0ce5782f0bc5fb5d4b14d5d713f21268b612cb18a2f14e19e3cca1c2270940b1f74220da0788fea9e142c803bcc77b9b2c04479a9432f06b9b29f3f7705 SHA512 2bfdb6f1cf7678dc9fafd66c25c07f55671f39600a44c606bac33652806105ff448d231202fb405307a0a49716557aa7cc63d371163821af2d919422ff9e2e6f MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild deleted file mode 100644 index c71aa047c1a7..000000000000 --- a/sci-biology/shrimp/shrimp-2.0.1.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit flag-o-matic toolchain-funcs - -MY_PV=${PV//./_} - -DESCRIPTION="SHort Read Mapping Package" -HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" -SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" - -LICENSE="shrimp" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="custom-cflags" - -# file collision on /usr/bin/utils #453044 -DEPEND=" - !sci-biology/emboss - !sci-mathematics/cado-nfs" -RDEPEND="${DEPEND}" - -S=${WORKDIR}/SHRiMP_${MY_PV} - -pkg_setup() { - if [[ ${CC} == *gcc* ]] && ! tc-has-openmp; then - elog "Please set CC to an OPENMP capable compiler (e.g. gcc[openmp] or icc" - die "C compiler lacks OPENMP support" - fi -} - -src_prepare() { - sed -e '1 a #include <stdint.h>' -i common/dag_glue.cpp || die - # respect LDFLAGS wrt 331823 - sed -i -e "s/LDFLAGS/LIBS/" -e "s/\$(LD)/& \$(LDFLAGS)/" \ - -e 's/-static//' Makefile || die -} - -src_compile() { - append-flags -fopenmp - use custom-cflags || append-flags -O3 # per instructions in BUILDING - tc-export CXX - emake CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" -} - -src_install() { - rm bin/README - dobin bin/* - insinto /usr/share/${PN} - doins -r utils - dodoc HISTORY README TODO SPLITTING_AND_MERGING -} |