diff options
author | V3n3RiX <venerix@koprulu.sector> | 2024-03-26 13:01:14 +0000 |
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committer | V3n3RiX <venerix@koprulu.sector> | 2024-03-26 13:01:14 +0000 |
commit | e978c365080e8765f234868ad266cd333c53a94f (patch) | |
tree | afd5bc811cabc934ef3382433ba23669cb62996c /sci-biology/samtools | |
parent | 3c68115c5485266603d1a893921971272f2be586 (diff) |
gentoo auto-resync : 26:03:2024 - 13:01:14
Diffstat (limited to 'sci-biology/samtools')
-rw-r--r-- | sci-biology/samtools/Manifest | 2 | ||||
-rw-r--r-- | sci-biology/samtools/samtools-1.19.2.ebuild | 47 |
2 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index d9bbfcc05f0a..add06bedafa2 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,3 +1,5 @@ DIST samtools-1.17.tar.bz2 8605080 BLAKE2B 09cb0bff7bf7113a77f57fdb879765b28b65461a574e4a1ab20ae2327af46e5616e04f03eb68706d42ba0643e887d7921974a3d78c5f87d296a4c3b691215260 SHA512 107a6df858c6bd2556ba4e86cc1922c3184df095f347039fa94bfd24e5ee21e1a4a9fba5a7cce248a06ad47f99978d9aae570efee7e30e165f33ea848a2cd3c3 +DIST samtools-1.19.2.tar.bz2 9150483 BLAKE2B fb845b2ccd61f1731ef4cdc180f4b9a4ac75e8c73c1ceaa9409b99e8052ca66b88c73fc71fd1067942aa24964f6df8dcb2d93631e5757e0cc200d7a3b9fad461 SHA512 c08d729fed21112855e0acc9cf7f29c7670d38a02ad6b0f2e9b9ef15a18f07e3e194cc4f6913481c98cd3e85dd4dc975dac96155b892da58bbe8ea3679a5270f EBUILD samtools-1.17.ebuild 926 BLAKE2B c2baac0d68599fadfc1825e2c0046c0596d50cedd15e6859bbfffbd3d735ae6dca2e873d835120da7be8a9c91ce17dd449010dfa956899de69c807da0cc60c7c SHA512 d43c9a9da338c0820f0237925895684077a2df428be3892f3433f050c3082d605a1edefdb265ded6f123eed491dc05578d4e46177eb79d7fdad3eebc710e3764 +EBUILD samtools-1.19.2.ebuild 926 BLAKE2B a9acf64c51c87cf5d913982d22dba55901111ed1802f5795b0a1bd66979b600d815ee37c29aae83bc2d58c73a61330a4ada70fac4192022d23add1bdc89cf26c SHA512 ab73ecba708535299d9cbfc3c02a6efb292b9c85658247a7eba37b915776493027a2ca98de2e8bfe373a667119a06629a3a86f97eded244b7722887c685710c2 MISC metadata.xml 409 BLAKE2B c94eab9ebda4844beb471694106e353ccbbaca53e69de680301c6cfab3f3b6224ec94fcd631c9de2811d309463e5ee6decf2e443bfc68921f3362c6a312cd3af SHA512 fb2d3686e1ee70e4e80266a26603b3e52b680b1537a4569493a3a0511b93e2acdb2be3136df7ae54905a9f86fb7e53fa054607262751ebd8f54903f1905dad24 diff --git a/sci-biology/samtools/samtools-1.19.2.ebuild b/sci-biology/samtools/samtools-1.19.2.ebuild new file mode 100644 index 000000000000..42879b0f8698 --- /dev/null +++ b/sci-biology/samtools/samtools-1.19.2.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" + +RDEPEND=" + dev-lang/perl + =sci-libs/htslib-$(ver_cut 1-2)*:= + sys-libs/ncurses:=[unicode(+)] + sys-libs/zlib" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + default + + # remove bundled htslib + rm -r htslib-* || die +} + +src_configure() { + econf \ + --with-ncurses \ + --with-htslib=system \ + CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_install() { + default + + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples +} |