diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
| commit | 0f558761aa2dee1017b4751e4017205e015a9560 (patch) | |
| tree | 037df795519468a25d9362b4e95cdaeb84eb1cf9 /sci-biology/samtools | |
| parent | 752d6256e5204b958b0ef7905675a940b5e9172f (diff) | |
gentoo resync : 29.12.2022
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/Manifest | 6 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.13.ebuild | 47 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.15.1.ebuild (renamed from sci-biology/samtools/samtools-1.15.ebuild) | 2 |
3 files changed, 3 insertions, 52 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 2f378c0428d2..1c8c07cfbbda 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,8 +1,6 @@ AUX samtools-0.1.20-buildsystem.patch 6737 BLAKE2B 71445f57735903bccc2720a32f42b27093f670e383d2d194b5692b1ba536e3df44204711cf4574b3933e5ce00605b661b1a36d79ca7f193ce36816271a3f8214 SHA512 ecb05971fbea4570ec161a165cb581b38ed727bb7e5b769862984bf035414cd564ab809882dc3272f8b192feeb86e29247d7327afa73ff668b01c03c58bb177d DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 -DIST samtools-1.13.tar.bz2 7984998 BLAKE2B e46161c43d4ea51c3ef1d9ed74c40c21b70aef80aa903a49b94b3d468f9211e9147281204eb61b9843c071f09ead08c924e3d624d4df76a1d02ba9ceb318399a SHA512 647fbad2935dfc3e4f85da257a6ee59af40078024a3b77f117dada5f55846e381a096db3cf62a63c04ae95dfc9fadb1d515b8d618e6388bc93f0b2ac85eaf6ea -DIST samtools-1.15.tar.bz2 7832423 BLAKE2B 5bdfaec750faaa8d84eb601e75f513d726724d3f2f882d9e16edfe4802bd1ad8fee5f1208c93f450fff37125998cb50ff2247fce514d94e580d5d292555da930 SHA512 21ce4aff90514a393e685cbb6fa7833c88010b18846be0190d49e8da70995252c2e17b5108113d2313a752706618041c74680efc9ed5539b97ebc0589cb6c6e7 +DIST samtools-1.15.1.tar.bz2 7831692 BLAKE2B 0fe94ff05075b219c77d0da8500c64bdffd53927950b5a67f8708c5c326ebc90a40c193b3bcf0baf3d09baed6fa596d9d024cb529340c6887de88614c9ff4bd6 SHA512 54a8a394b6b5231bd942236ec353027caaf48b4552a00b35573a1e71d680320d8140a73409bb76066c82e86fe62cf74f2f8f2f1a1e4aec96e4e8b9aff0d44a46 EBUILD samtools-0.1.20-r4.ebuild 2049 BLAKE2B d377712eaca931258b37645e6a6b3cc379fdb550ef83a0c272a3eb564d7753185fea53416973e4fdf2c25b79475a81ae72b646ce22c570c934e4eabce8a9ded6 SHA512 c0d387f715ebf1f746ea4e4a7eab85a86ef0bff646c9a69639b17ef02e93c39982941d7eb811a6d67b0e635c9c4e05924d2b89a6809c3bd0592db91894dab4aa -EBUILD samtools-1.13.ebuild 886 BLAKE2B e96ccbff6d7310e4691118bc191a020525a92aa49dd24478be11185e1767788849bae9d575d59dc139f77b0c977222684c82a45487b4d10d77da20347f5170b5 SHA512 3eb07532ae9d7995279663d8e09602e30a5055b13388ceb83aa369e52bb2291f21014f60dccc5569825f6e7683801b737557539270007bc16a12015d86c17fec -EBUILD samtools-1.15.ebuild 886 BLAKE2B 8d87c954c2f16dc2ad093d41c6b123a7b46473afe662dae9a69c8bb5200b805ce8abba43b8b6ce47caf4647bc2b566d53b613bc786190ad77feca26be538cce3 SHA512 0a6db9a7e3d943043fad935a41451ee58d28feb66eb9263a12d4e5adeae187e4aba8d4e3529eabeaf3b8fb9705172a32d65fa77a5b866a805721fb87d6b253c8 +EBUILD samtools-1.15.1.ebuild 917 BLAKE2B ce0e56d9fd4d45f32d53e014648ea154b55363f9b48f1293f1687c2f2c668d7f498bb346bc291bf30c0be23499326cc38eb93065114c932269808825ece939e6 SHA512 dee59486e4942a45450b41aa1df296264dcc6396463a8e2e3ce93f4d7fb14acae252d4798492a19912999ca621c2188ef25ee6063fee7c9bc673ba57169a99c6 MISC metadata.xml 409 BLAKE2B c94eab9ebda4844beb471694106e353ccbbaca53e69de680301c6cfab3f3b6224ec94fcd631c9de2811d309463e5ee6decf2e443bfc68921f3362c6a312cd3af SHA512 fb2d3686e1ee70e4e80266a26603b3e52b680b1537a4569493a3a0511b93e2acdb2be3136df7ae54905a9f86fb7e53fa054607262751ebd8f54903f1905dad24 diff --git a/sci-biology/samtools/samtools-1.13.ebuild b/sci-biology/samtools/samtools-1.13.ebuild deleted file mode 100644 index 3165c7b7381c..000000000000 --- a/sci-biology/samtools/samtools-1.13.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}*:= - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} diff --git a/sci-biology/samtools/samtools-1.15.ebuild b/sci-biology/samtools/samtools-1.15.1.ebuild index 74aee5acaaa2..21d2b8a5077d 100644 --- a/sci-biology/samtools/samtools-1.15.ebuild +++ b/sci-biology/samtools/samtools-1.15.1.ebuild @@ -7,7 +7,7 @@ inherit toolchain-funcs DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" LICENSE="MIT" SLOT="0" |