reinit the tree, so we can have metadata

6 files changed, 210 insertions, 0 deletions

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
new file mode 100644
index 000000000000..a31328ae87d6
--- /dev/null
+++ b/sci-biology/rebase/Manifest
@@ -0,0 +1,11 @@
+DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
+DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec
+DIST rebase-1703.tar.xz 122252304 SHA256 dbd5fa2751b693b1babcef9c69a6f7a9e539550aeea712c569dcc0f9a93998e3 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 WHIRLPOOL b42693781f5faa8a2dbd15204d8f1fc2dc08fb233fa536bd3c0405799059b830c8be214d34f54e2645c8c20e7bd1359882167d175a5026a8acbea29b4f00208c
+DIST rebase-1704.tar.xz 124351900 SHA256 0622cf14241a4d0d725cb149378d5b2a5aa6094968afcf3f70b8025fba1cfd6b SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7 WHIRLPOOL 161f04c90c1eb290625ff0ee202f78c2b1fb9c60ac5874ca11568927e4f7ea23c6a9fed42a509b1350d0b267ecb8ffa06fa4f1d38e4da0aba28ad540ea749c6c
+EBUILD rebase-1701.ebuild 1052 SHA256 272c0536c5a330de50d3be55553dc0a45adb2ad3c5d7b8c7dad3ff0c9a01e295 SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b WHIRLPOOL f3c738c2d896c4f628c0c620da5e3d2a41a4b1cafd62a0d7f0fca90de57c505112a949f7ace0e2da7ae892708993cdfb7cbd44d5d1f07cb8247ac2ff1893d295
+EBUILD rebase-1702.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace
+EBUILD rebase-1703.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace
+EBUILD rebase-1704.ebuild 1091 SHA256 a90c8a84aa2fb0d07dd0eac72ee723468ec0cfabf50e9d035f9db32fc661e57f SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf WHIRLPOOL 3033c3eaae0d96afe63f1be60fbb3cfd588ca4e05b96355f9b561032c9f5b1d08b99029de5d409ce372560e6addbb8182279c963bfa865f18ee5b32f06b00ace
+MISC ChangeLog 6596 SHA256 92fb45bcb60479323913c1996d172eb43a5547d0fd9fd43e89dce08f519c4375 SHA512 66e57f9259ac4e70d5685fbf4b5492a7675c74636982120ac80233b2a20a69e6b7f190c1d6146b9b9c47078753723f84c15b256d015133fdacb26d11d57e56b9 WHIRLPOOL 12278589cdf99a99fe9e398db319bb61a316bfc7bbbb060f408e41e58a00cee012ccde3882f4f83bf799e15164911354cc0ab2965f949fbd82b9d6d0ac6e6451
+MISC ChangeLog-2015 21128 SHA256 b6ff29b80d2a0354cf85684f4fca7b0af1342cc26abd14d3662e407f06032dfa SHA512 6ad5513f3e6003749004d4f7e461b3aa5917d0d448016709d67ae918ccb07f0e03dafb8c916d525ec63f0d25fcfca659565ace4031ce7b2c8165ffc3cffb54ec WHIRLPOOL f6264e3f8ec023a70532e28820cfdd3ec877cdbbefb6fb6f67ea0953b4cf90162aa7629d145917173578920e51e2b91f42b1b23d8e8b7db8142ff1c083ba6f74
+MISC metadata.xml 914 SHA256 4969698e54e50dcb212db1f62d54339fcdaf4cd94446ad0b2b252b24e1efe1e8 SHA512 86e14836fdc2e5bbc4185e8294d471555b076701041e867d0261b15c3495b131d205e8b2dafd56b96594ea2d6c0103160958e47c9c0db340a1779c8b57a696c3 WHIRLPOOL 2df25bed339494073affa6e4cdc7fccf1f69769518f364c6607c730c788cd0cec93b8a55d00e0400e6ce8614177e0204ed2203829bbee5bd9857e4386e17b257
diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml
new file mode 100644
index 000000000000..1d08046a6655
--- /dev/null
+++ b/sci-biology/rebase/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+  <longdescription>
+		The Restriction Enzyme data BASE is a collection of information about
+		restriction enzymes and related proteins. It is maintained by New
+		England Biolabs. It contains published and unpublished references,
+		recognition and cleavage sites, isoschizomers, commercial availability,
+		methylation sensitivity, crystal and sequence data. DNA
+		methyltransferases, homing endonucleases, nicking enzymes, specificity
+		subunits and control proteins are also included. More recently,
+		putative DNA methyltransferases and restriction enzymes, as predicted
+		from analysis of genomic sequences, are also listed.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/rebase/rebase-1701.ebuild b/sci-biology/rebase/rebase-1701.ebuild
new file mode 100644
index 000000000000..a680fa1783bb
--- /dev/null
+++ b/sci-biology/rebase/rebase-1701.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}
diff --git a/sci-biology/rebase/rebase-1702.ebuild b/sci-biology/rebase/rebase-1702.ebuild
new file mode 100644
index 000000000000..70694cf2ca8a
--- /dev/null
+++ b/sci-biology/rebase/rebase-1702.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}
diff --git a/sci-biology/rebase/rebase-1703.ebuild b/sci-biology/rebase/rebase-1703.ebuild
new file mode 100644
index 000000000000..70694cf2ca8a
--- /dev/null
+++ b/sci-biology/rebase/rebase-1703.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}
diff --git a/sci-biology/rebase/rebase-1704.ebuild b/sci-biology/rebase/rebase-1704.ebuild
new file mode 100644
index 000000000000..70694cf2ca8a
--- /dev/null
+++ b/sci-biology/rebase/rebase-1704.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}