diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
| commit | 40aaaa64e86ba6710bbeb31c4615a6ce80e75e11 (patch) | |
| tree | 758c221bad35c9288d0bd6df9c7dfc226728e52c /sci-biology/raxml | |
| parent | 8d5dbd847cbc704a6a06405856e94b461011afe3 (diff) | |
gentoo resync : 28.04.2021
Diffstat (limited to 'sci-biology/raxml')
| -rw-r--r-- | sci-biology/raxml/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 4 | ||||
| -rw-r--r-- | sci-biology/raxml/raxml-7.2.6.ebuild | 25 |
3 files changed, 14 insertions, 19 deletions
diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest index 224df3f6ebf7..3b965935e19e 100644 --- a/sci-biology/raxml/Manifest +++ b/sci-biology/raxml/Manifest @@ -1,4 +1,4 @@ -AUX raxml-7.2.6-makefile.patch 777 BLAKE2B 294eff4ddc4046a4e29974c6f4850d040c9a7c4907415913da209b7f71eee336dfa439d446f67284b4eaabb413905012c867e38a2b44653e7f8b618537108a13 SHA512 0cc326e8fed0882c56193fef9d1c98577f2252acc4dc25e650e0806d89ded0e2911e6967272a6d101cf830cfe63a190a8f5220fd7573864f5fa60106069ad74f +AUX raxml-7.2.6-makefile.patch 786 BLAKE2B d6fc28b20fc3b00b33cefd93fa90f0db255eec642a3fd760baa5489ab90dbb31d9896fe7a595e9f2e4e47b53ab24e1ef2a80486dbe77062f835fce17687a50ae SHA512 955c1403dbae7d5308f10808c3689d04cd4bc6166647fd5d7c6a5eafca45b42f409a22642a57dc19a8f3ce4e00e2e554988ed5a02954ee85ab805759e60beeea DIST RAxML-7.2.6.tar.bz2 202803 BLAKE2B 579676ff9fad1563eabb9507015acff010977a89ae087df9b828b80bc9352ed44c98faeaf4c8d884ffa14176bfa28772dc9872ad8b5d401aff8b834c728e5f65 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 -EBUILD raxml-7.2.6.ebuild 962 BLAKE2B d9ab298e6e8ac66ed9f2274fed8ed2b1f87d66a5532af63402bc7d4b14e8b50e558697ddb3a5654451c19f20a588962140d7cd073825794df6fed4cc5bf9179b SHA512 dd75e9c82ef3a3d2c3c2813690af6ac95548842e727c7819b63054d7e982b4ea7ebfd9020c4ee7b9f80bd0b38162c5559e25a19bf5a60efd2d63e3798fae243b +EBUILD raxml-7.2.6.ebuild 902 BLAKE2B 23d2b1a93bf50587d5bcacbaf261ad98eecd4e6d6d86bce62bad4459286bdb678c60ad5699cd22c5d6e03df4fb49ccd95c40bbb30f6ec7990e8f81518709aa66 SHA512 5583a0fcb21f80f1cc1d7fe282f56235b6b0add1699330652f8c6c669cbbb1975eb8e088f566252b897a94e5bb80f2738de538d570951bd7508b5a607324c34f MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch index ae83e2eef4e7..6b82ed65b770 100644 --- a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch +++ b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch @@ -14,7 +14,7 @@ index 716b6c6..f0c1de2 100644 -CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -+CFLAGS += -D_GNU_SOURCE ++CPPFLAGS += -D_GNU_SOURCE @@ -23,7 +23,7 @@ index 716b6c6..f0c1de2 100644 raxmlHPC : $(objs) - $(CC) -o raxmlHPC $(objs) $(LIBRARIES) -+ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) ++ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) $(LIBS) classify.o : classify.c $(GLOBAL_DEPS) evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS) diff --git a/sci-biology/raxml/raxml-7.2.6.ebuild b/sci-biology/raxml/raxml-7.2.6.ebuild index 50fffc34accb..adb044426381 100644 --- a/sci-biology/raxml/raxml-7.2.6.ebuild +++ b/sci-biology/raxml/raxml-7.2.6.ebuild @@ -1,34 +1,29 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html" SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2" +S="${WORKDIR}/RAxML-${PV}" -SLOT="0" LICENSE="GPL-2" +SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="cpu_flags_x86_sse3 +threads" - REQUIRED_USE="cpu_flags_x86_sse3" # mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS -DEPEND="" # mpi? ( virtual/mpi )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/RAxML-${PV}" - -src_prepare() { - epatch "${FILESDIR}"/${P}-makefile.patch +PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) - use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3 +src_configure() { + use cpu_flags_x86_sse3 && append-cppflags -D__SIM_SSE3 use threads && \ - append-cflags -D_USE_PTHREADS && \ - append-ldflags -pthread + append-cppflags -D_USE_PTHREADS && \ + append-libs -pthread tc-export CC } |