diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2023-02-19 20:16:04 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2023-02-19 20:16:04 +0000 |
| commit | d4725f7e03f4d243d29d408f4b9de39459e00d4c (patch) | |
| tree | 5b5a3f8042f807f8277163cdc362e03f3333fec7 /sci-biology/pysam | |
| parent | 80c51284f0017d5765c7ae39207be9c58f4bfa17 (diff) | |
gentoo auto-resync : 19:02:2023 - 20:16:03
Diffstat (limited to 'sci-biology/pysam')
| -rw-r--r-- | sci-biology/pysam/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/pysam/pysam-0.20.0.ebuild (renamed from sci-biology/pysam/pysam-0.19.1.ebuild) | 9 |
2 files changed, 8 insertions, 5 deletions
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index 02ce6871e04a..9bdae09a6265 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,3 +1,3 @@ -DIST pysam-0.19.1.gh.tar.gz 3649711 BLAKE2B dac3ab5a86ef95048e966fc007a0aa1c96ca8498f7c2672c2ed024f34b508bac42048e58b8ae0b538cea137a51e1874bb5c2c4976c7f3dc657a4c2cf5f9a27fb SHA512 719f3a15e7dd277a90cce7f938b674ff86ef6b8f2d3440c3a0bf2ea22c4fbc2b3c9e0cf297d958c99e09dcd6e9905f32e8c632158aa8d5af8210e79705e1c479 -EBUILD pysam-0.19.1.ebuild 1597 BLAKE2B 05400695c7825c0ffd97c774792476af0e91eed46673fdb52550d15b291f29e75227b3188f4db39298e676bfcf1fd8fe351fc7a3ca79ed4f7ba4cd53e78739b2 SHA512 28e4b669d32910e02eca460d62a0765219595b3c038d34a9faeeb3a45d6d91032a5e2fb6903067ab8e5aacf47b84a779c13938a030dd9017e2021784eaf0849d +DIST pysam-0.20.0.gh.tar.gz 3748498 BLAKE2B 1c1b99e5ec34641c196dd574e634cc87d49baa594243eca20ad1f99d2c01b8aadead70a729f389c93cf6f5e95f20d9c7e3d050a47821d1b0dcaaff39d88e6825 SHA512 3f8402057e1d5c807886d1d38180dbdbfa8557700fa97bd59cb42df4d7cc461dcbe54808a169ba5f9696651e801fd0431480cd033b601cd4e9c11bf8bbf14e49 +EBUILD pysam-0.20.0.ebuild 1767 BLAKE2B 45a292847762698e9629508f6b22624202509f946085995d8bd110fe4cd227e707546ecdae33b68036029b94bcf4824699a62031fd05144c6cfdd605b0c2e190 SHA512 3e54171befa77ac9d03114069064b5b166a4010c9fc8076540680660d8d90a7650264583d41bd6dce8d10e5c1a4723969cc2deb568d29283b91bf5b53351de35 MISC metadata.xml 442 BLAKE2B e3d339868a09d8930ff6d83f414f8166ed283a66d83d5b0fed0031024db151b17b1347f5e015f2b9c2152a041e2beb70696362be9b4e3fc225078bc5c520ad58 SHA512 4b1d08c5524e1bb04129e0d38f0584654b34979024afd2cf15bd482654ca8fac9c82e6db0661f7370f9fefa6949f1291ba3c18a9dca5d5041bd6f76554fa33c7 diff --git a/sci-biology/pysam/pysam-0.19.1.ebuild b/sci-biology/pysam/pysam-0.20.0.ebuild index 1164fd6bc091..6372f1602f70 100644 --- a/sci-biology/pysam/pysam-0.19.1.ebuild +++ b/sci-biology/pysam/pysam-0.20.0.ebuild @@ -17,14 +17,14 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -RDEPEND="=sci-libs/htslib-1.15.1*:=" +RDEPEND="=sci-libs/htslib-1.16*:=" DEPEND="${RDEPEND} dev-python/cython[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}]" BDEPEND=" test? ( - =sci-biology/bcftools-1.15.1* - =sci-biology/samtools-1.15.1* + =sci-biology/bcftools-1.16* + =sci-biology/samtools-1.16* )" distutils_enable_tests pytest @@ -35,6 +35,9 @@ EPYTEST_DESELECT=( # only work with bundled htslib 'tests/tabix_test.py::TestRemoteFileHTTP' 'tests/tabix_test.py::TestRemoteFileHTTPWithHeader' + # broken test + # https://github.com/pysam-developers/pysam/issues/1151#issuecomment-1365662253 + 'tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope' ) python_prepare_all() { |