diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2023-04-06 23:28:41 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2023-04-06 23:28:41 +0100 |
| commit | 91f19a3f41e80c4ab434a07636edb90912ef7556 (patch) | |
| tree | 94510a6b3336b3129759452bf1811330e591c0c0 /sci-biology/pysam | |
| parent | 3d1ec36f5f52760f2431b79c71dd9b7aaefbc9ee (diff) | |
gentoo auto-resync : 06:04:2023 - 23:28:41
Diffstat (limited to 'sci-biology/pysam')
| -rw-r--r-- | sci-biology/pysam/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/pysam/pysam-0.21.0.ebuild (renamed from sci-biology/pysam/pysam-0.20.0.ebuild) | 9 |
2 files changed, 5 insertions, 8 deletions
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index 1fd20223d758..931d51cf12e1 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,4 +1,4 @@ -DIST pysam-0.20.0.gh.tar.gz 3748498 BLAKE2B 1c1b99e5ec34641c196dd574e634cc87d49baa594243eca20ad1f99d2c01b8aadead70a729f389c93cf6f5e95f20d9c7e3d050a47821d1b0dcaaff39d88e6825 SHA512 3f8402057e1d5c807886d1d38180dbdbfa8557700fa97bd59cb42df4d7cc461dcbe54808a169ba5f9696651e801fd0431480cd033b601cd4e9c11bf8bbf14e49 -EBUILD pysam-0.20.0.ebuild 1767 BLAKE2B 45a292847762698e9629508f6b22624202509f946085995d8bd110fe4cd227e707546ecdae33b68036029b94bcf4824699a62031fd05144c6cfdd605b0c2e190 SHA512 3e54171befa77ac9d03114069064b5b166a4010c9fc8076540680660d8d90a7650264583d41bd6dce8d10e5c1a4723969cc2deb568d29283b91bf5b53351de35 +DIST pysam-0.21.0.gh.tar.gz 3842829 BLAKE2B 83db290ec0bae71106276ed4f1721292c0d2fa55053c7451f0a8a79619b1c4d8444b99293ac5d8051bfb0b59e984e32a89798bab091e3a019b7c2a3fb7414d1c SHA512 b2ac986b6a352df1d2066a224d710648a88d8ad44273623a89ae0f4bb2645b00f0d0e1685c8ccedfd379259255957e653f3c3199621ac1d4c26098f538b6bfa7 +EBUILD pysam-0.21.0.ebuild 1591 BLAKE2B 2b0673c61cb83eaeba7b05ad325d0f61de530b1c8de0a2e2cb0e7399f8b1ba0d7489160086d7264056c675b4e8785fcb79cdd0a9f9506bc4e57a36ea65121b25 SHA512 47d3101651a21e6d59fba0641d76ac34dfe608b267ba726fddbdab2aaa25dd5be6bf51bc707fc4c19b6e9e0222fa0419368b5d4b70a168cfec4c0666429ce114 EBUILD pysam-9999.ebuild 1709 BLAKE2B b7297d21abf0e581c5c2d8a72a7e6805cb5f96f6e878cc979fc0f5a34e57bdd25a2f50abaa9ee10040559e66ee42d3a24696a7093103658175b27858acaac95c SHA512 7e7a782243897a89a3539b3eb79ccd0790c6b0afcf79453526c30371f867faaf8eca6454e64d3bea250ff13753ff400fe5ff3352c080c85285cafa2346e3564a MISC metadata.xml 442 BLAKE2B e3d339868a09d8930ff6d83f414f8166ed283a66d83d5b0fed0031024db151b17b1347f5e015f2b9c2152a041e2beb70696362be9b4e3fc225078bc5c520ad58 SHA512 4b1d08c5524e1bb04129e0d38f0584654b34979024afd2cf15bd482654ca8fac9c82e6db0661f7370f9fefa6949f1291ba3c18a9dca5d5041bd6f76554fa33c7 diff --git a/sci-biology/pysam/pysam-0.20.0.ebuild b/sci-biology/pysam/pysam-0.21.0.ebuild index 6372f1602f70..588cd1bc4f1b 100644 --- a/sci-biology/pysam/pysam-0.20.0.ebuild +++ b/sci-biology/pysam/pysam-0.21.0.ebuild @@ -17,14 +17,14 @@ LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -RDEPEND="=sci-libs/htslib-1.16*:=" +RDEPEND="=sci-libs/htslib-1.17*:=" DEPEND="${RDEPEND} dev-python/cython[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}]" BDEPEND=" test? ( - =sci-biology/bcftools-1.16* - =sci-biology/samtools-1.16* + =sci-biology/bcftools-1.17* + =sci-biology/samtools-1.17* )" distutils_enable_tests pytest @@ -35,9 +35,6 @@ EPYTEST_DESELECT=( # only work with bundled htslib 'tests/tabix_test.py::TestRemoteFileHTTP' 'tests/tabix_test.py::TestRemoteFileHTTPWithHeader' - # broken test - # https://github.com/pysam-developers/pysam/issues/1151#issuecomment-1365662253 - 'tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope' ) python_prepare_all() { |