diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-06-29 12:04:12 +0100 |
| commit | 0f558761aa2dee1017b4751e4017205e015a9560 (patch) | |
| tree | 037df795519468a25d9362b4e95cdaeb84eb1cf9 /sci-biology/pysam | |
| parent | 752d6256e5204b958b0ef7905675a940b5e9172f (diff) | |
gentoo resync : 29.12.2022
Diffstat (limited to 'sci-biology/pysam')
| -rw-r--r-- | sci-biology/pysam/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/pysam/pysam-0.19.1.ebuild (renamed from sci-biology/pysam/pysam-0.17.0.ebuild) | 16 |
2 files changed, 10 insertions, 10 deletions
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index c990614486e8..01d3cd352fa6 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,3 +1,3 @@ -DIST pysam-0.17.0.tar.gz 3579324 BLAKE2B 6b88fe771350f20fa7c90a4c02c60fefd6a34d979c687fce1e34a17e1ff203c7d2d07e36b64f7a73f99676b805334df7f049932ce15e26362a5214da03435d64 SHA512 16740f08fb68a1f24656454b834dd9ac52ad9f864f307564566fc244bbd2efb7cb17107b2e85ca5c56af817918a138d1c071533de1b80e5bba42b01bbad7f552 -EBUILD pysam-0.17.0.ebuild 1586 BLAKE2B 38351a74c0a57348fdc1999f35b10cd8645160175386b94885e49bbd99bc64f577c326d04e09ba56abce0c0c01331276ebef080fbf519dbfbae41960b6ccc61a SHA512 bd0e336603727c67cd363c628daa9aa9b95e6fe2dbcc06425fcbcf03bd8bd4bd79e651b637434cdbbecd85ebc2841647863910e31f94dd9641694fb4c68de8d4 +DIST pysam-0.19.1.gh.tar.gz 3649711 BLAKE2B dac3ab5a86ef95048e966fc007a0aa1c96ca8498f7c2672c2ed024f34b508bac42048e58b8ae0b538cea137a51e1874bb5c2c4976c7f3dc657a4c2cf5f9a27fb SHA512 719f3a15e7dd277a90cce7f938b674ff86ef6b8f2d3440c3a0bf2ea22c4fbc2b3c9e0cf297d958c99e09dcd6e9905f32e8c632158aa8d5af8210e79705e1c479 +EBUILD pysam-0.19.1.ebuild 1597 BLAKE2B 37065e16bd756380808b1eb48c78296e2652e7aaa59dbb63ed66ea81049c9c4daa6516c4cd20fd572213e3d43c34a5e118ae11a6eb42c7da61f7b67c8b5b651b SHA512 27ef49bddd395ca67db60a2b34bcc9dc184c035b42c66410274f47d47cf03e6f712231b89cbd18657157b5d8a511b82fdc4272a599f71eca5f879f895fb8d93e MISC metadata.xml 442 BLAKE2B e3d339868a09d8930ff6d83f414f8166ed283a66d83d5b0fed0031024db151b17b1347f5e015f2b9c2152a041e2beb70696362be9b4e3fc225078bc5c520ad58 SHA512 4b1d08c5524e1bb04129e0d38f0584654b34979024afd2cf15bd482654ca8fac9c82e6db0661f7370f9fefa6949f1291ba3c18a9dca5d5041bd6f76554fa33c7 diff --git a/sci-biology/pysam/pysam-0.17.0.ebuild b/sci-biology/pysam/pysam-0.19.1.ebuild index afdc4777e20e..41afb5307775 100644 --- a/sci-biology/pysam/pysam-0.17.0.ebuild +++ b/sci-biology/pysam/pysam-0.19.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -PYTHON_COMPAT=( python3_{8..10} ) +PYTHON_COMPAT=( python3_{8..11} ) inherit distutils-r1 @@ -11,20 +11,20 @@ DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping for HOMEPAGE=" https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/" -SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -RDEPEND="=sci-libs/htslib-1.13*:=" +RDEPEND="=sci-libs/htslib-1.15.1*:=" DEPEND="${RDEPEND} dev-python/cython[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}]" BDEPEND=" test? ( - =sci-biology/bcftools-1.13* - =sci-biology/samtools-1.13* + =sci-biology/bcftools-1.15.1* + =sci-biology/samtools-1.15.1* )" distutils_enable_tests pytest @@ -40,8 +40,8 @@ EPYTEST_DESELECT=( python_prepare_all() { # unbundle htslib export HTSLIB_MODE="external" - export HTSLIB_INCLUDE_DIR="${EPREFIX}"/usr/include - export HTSLIB_LIBRARY_DIR="${EPREFIX}"/usr/$(get_libdir) + export HTSLIB_INCLUDE_DIR="${ESYSROOT}"/usr/include + export HTSLIB_LIBRARY_DIR="${ESYSROOT}"/usr/$(get_libdir) rm -r htslib || die # prevent setup.py from adding RPATHs (except $ORIGIN) |