diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
| commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
| tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-biology/probcons/files/probcons-1.12-cxxflags.patch | |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-biology/probcons/files/probcons-1.12-cxxflags.patch')
| -rw-r--r-- | sci-biology/probcons/files/probcons-1.12-cxxflags.patch | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/probcons/files/probcons-1.12-cxxflags.patch b/sci-biology/probcons/files/probcons-1.12-cxxflags.patch new file mode 100644 index 000000000000..e07ebe1a613f --- /dev/null +++ b/sci-biology/probcons/files/probcons-1.12-cxxflags.patch @@ -0,0 +1,47 @@ +diff --git a/Makefile b/Makefile +index 75fc47a..4a19140 100644 +--- a/Makefile ++++ b/Makefile +@@ -15,6 +15,8 @@ CXX = g++ + # c) RELEASE mode + ################################################################################ + ++OPT_CXXFLAGS = -O3 -W -Wall -pedantic -funroll-loops ++ + OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12" + + # debug mode +@@ -25,7 +27,7 @@ OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12" + + # release mode + #CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -mmmx -msse -msse2 -mfpmath=sse -march=pentium4 -mcpu=pentium4 -funroll-loops -fomit-frame-pointer +-CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -funroll-loops ++CXXFLAGS = $(OPT_CXXFLAGS) -DNDEBUG $(OTHERFLAGS) + + ################################################################################ + # 3) Dependencies +@@ -37,19 +39,19 @@ TARGETS = probcons compare project makegnuplot + all : $(TARGETS) + + probcons : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h Main.cc +- $(CXX) $(CXXFLAGS) -lm -o probcons Main.cc ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o probcons Main.cc -lm + + compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc +- $(CXX) $(CXXFLAGS) -o compare CompareToRef.cc ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o compare CompareToRef.cc + + fixref : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h FixRef.cc +- $(CXX) $(CXXFLAGS) -o fixref FixRef.cc ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o fixref FixRef.cc + + project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc +- $(CXX) $(CXXFLAGS) -o project ProjectPairwise.cc ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o project ProjectPairwise.cc + + makegnuplot : MakeGnuPlot.cc +- $(CXX) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc ++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc + + .PHONY : clean + clean: |