reinit the tree, so we can have metadata

3 files changed, 68 insertions, 0 deletions

diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest
new file mode 100644
index 000000000000..37fd81a19634
--- /dev/null
+++ b/sci-biology/prints/Manifest
@@ -0,0 +1,5 @@
+DIST prints-39.0.tar.bz2 26277011 SHA256 671f870230424014d4b104b24adb13ad5a30f1d947d9565de4943f77dccb5187 SHA512 4ea48a2a0892739ac4e32a6309922b7b4ad01f9d2f847f7c42c7e6a00e8f56bab0771d272adcaed1f85516ea93245fb8c7864762c4699023a8d85d61c012bdc7 WHIRLPOOL 73303a8d5c92e3bc3d7bded006bd681e0ae0314ce3f605a040a9532e7ac5ecdddb8aa813f9deb9c4068bd89e13a9b3d0c97336dc7bc33acf1c19b75c9370ce22
+EBUILD prints-39.0-r1.ebuild 1044 SHA256 ba43cca5e90d21d98471da5d828dcb1a8f6cc142b57753a39135674697a43897 SHA512 056458b00dbcee0f8720e1a74512ab513836d3ec762cd0b764c4fe3c2a8f450b76af21bff93e75fd37d0b00317bac7087c24032683125b26bbf9699b62f9cf9d WHIRLPOOL 2eafe2555e2579f3c7b3d4df2545a3fddd58c4e41ac43174fc9146412573d31ef72802908b22182a988947f07baab9086da9c7c6c74e9e61cbcb1593a7a71743
+MISC ChangeLog 2425 SHA256 d90f8176a1f120ddb6b5ef217e77158928e0399948e78f7482b1670706302168 SHA512 ae273aa9d742b182cb813719d02b523261b825ca205fa0924d0c783a4b9a88db4e3d28b6223f8aecd1920feed993f0f2a892bc2b183525e40b691fdfbc24f48a WHIRLPOOL be0323995e663ce13217bdef2ed918d704a387b8e3e46a0e6200a2b96119f44fef12f1ac8448e267d2d526b144e9a7a6d99a85a4a14f9fee4aadb2ca4ba80fd3
+MISC ChangeLog-2015 3722 SHA256 32d1b64e95e19d112f9ec33111dac20dd4f6f7aaf6d08ca7866407534f27d286 SHA512 d8cc113e4ff21e5ef9dfb4ca133a918fc626c35c432cfa806a0360565235c9ec1584a41e454de5518556ec6d21be7ee5f2479e4edc965443b0a433effed2a736 WHIRLPOOL fef37869cdc2e481d9070e7dc3d7aa8039f49073517f4268ead4abf25e5042c471e964cd0396f7c293f33beff3f0e5a2de7e0434447193c67d69ff21cec52dcb
+MISC metadata.xml 883 SHA256 7de53e2e1ad011a8ebb2e1a6fb20a5f493f546992d6e235b4dac0c888f2152cb SHA512 b90e950d75cdea30ce5a8e073a02b1d60d0a02512ab73979d23f6dccf591c8f74c5f98e3d62d49031b0a9b2dfbee213445a0efa890857061239379e9b3258c5f WHIRLPOOL 525bfcac5055f30d94d0624fc37cfae404839d6ea0a89a18b19c9c4fa3d2d9d54aa553810388af14d86da2a17b1a934efda98d1814ce988226c17e6250bb8037
diff --git a/sci-biology/prints/metadata.xml b/sci-biology/prints/metadata.xml
new file mode 100644
index 000000000000..af3ff0786e0c
--- /dev/null
+++ b/sci-biology/prints/metadata.xml
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+	<longdescription>
+		A protein motif fingerprint database maintained at the University of
+		Manchester. A fingerprint is a group of conserved motifs used to
+		characterise a protein family; its diagnostic power is refined by
+		iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs
+		do not overlap, but are separated along a sequence, though they may be
+		contiguous in 3D-space. Fingerprints can encode protein folds and
+		functionalities more flexibly and powerfully than can single motifs,
+		full diagnostic potency deriving from the mutual context provided by
+		motif neighbours.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/prints/prints-39.0-r1.ebuild b/sci-biology/prints/prints-39.0-r1.ebuild
new file mode 100644
index 000000000000..f9833579e71f
--- /dev/null
+++ b/sci-biology/prints/prints-39.0-r1.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV="${PV/./_}"
+
+DESCRIPTION="A protein motif fingerprint database"
+HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="public-domain"
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="emboss minimal"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+RDEPEND="${DEPEND}"
+
+src_compile() {
+	if use emboss; then
+		mkdir PRINTS || die
+		einfo
+		einfo "Indexing PRINTS for usage with EMBOSS"
+		EMBOSS_DATA="." printsextract -auto -infile prints${MY_PV}.dat || die "Indexing PRINTS failed"
+		einfo
+	fi
+}
+
+src_install() {
+	dodoc README
+
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins newpr.lis ${PN}${MY_PV}.{all.fasta,dat,kdat,lis,nam,vsn}
+	fi
+
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/${PN^^}
+		doins -r ${PN^^}/.
+	fi
+}