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authorV3n3RiX <venerix@redcorelinux.org>2020-11-25 22:39:15 +0000
committerV3n3RiX <venerix@redcorelinux.org>2020-11-25 22:39:15 +0000
commitd934827bf44b7cfcf6711964418148fa60877668 (patch)
tree0625f358789b5e015e49db139cc1dbc9be00428f /sci-biology/muscle
parent2e34d110f164bf74d55fced27fe0000201b3eec5 (diff)
gentoo resync : 25.11.2020
Diffstat (limited to 'sci-biology/muscle')
-rw-r--r--sci-biology/muscle/Manifest4
-rw-r--r--sci-biology/muscle/files/3.8.31-make.patch6
-rw-r--r--sci-biology/muscle/muscle-3.8.31.ebuild15
3 files changed, 11 insertions, 14 deletions
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index 9e311756e1fc..d4178fd5bb6a 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -1,4 +1,4 @@
-AUX 3.8.31-make.patch 989 BLAKE2B 1cbbee37b5c88a34705fd2adb78d4c5c1533a18f1896f3e4d909e17d15dbf5ccd5308137dd3a94f17ede40b637c9309e0694353e8f8e6c6c55cc966ebd4b52ef SHA512 e528b032d4e60d2ca22de1129da56125b8915ed288ee25965b2bc5b1d6118d1d589fa632dac9829011a405c3189b8b6b6c056eedde9dd30a9b6a6f572a5e2d2c
+AUX 3.8.31-make.patch 922 BLAKE2B 57f112a4538b1b0a791f9e151e0e27ba8c6af2beefb6ce95f064edd183315e17a09d92a9cd0a368907e2b4a1571463669e5ef83e96758603fa4807780ea98bc0 SHA512 c948991ab4f7b7d6e05ab63df00ea6ac576587e63f808c377cc86f4e3863c7cee207569d7f0a8572a8fcf81f2e23d9dd6b1270447a0028910301d74554ab1fac
DIST muscle3.8.31_src.tar.gz 515267 BLAKE2B 79a8517f7a14d8ee907104e9035e1284fcabec556544508fd9b712789759448969ce39ecbefcedac62c435dc91e109b3b5b7027120691310ffebda80ca80dd9e SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce
-EBUILD muscle-3.8.31.ebuild 602 BLAKE2B fb70469bb54d0002cc73e364334355ffc3888248cf51ee59ec466cff5145380de0285601cdb20a91af068368fb2c3414d91bcb82a93dee9fb84d5b3bb6f565f1 SHA512 4167a3402188bc2b17baa5419fae65e1a10c5884d8419de929434e3d44d985889a5131d34dae3854bc58e25450ccbc055d38839255a8153eb2e4d19ae3b84253
+EBUILD muscle-3.8.31.ebuild 580 BLAKE2B d9ccdea4e8e87b89c107d019c7b1ac87ecadf16a92c093e488e7121f6438de4cf003ffe0114402b3b7c90b08e484216908bb01e950f49f014ac748af259dcf58 SHA512 2295bd95b0388e43d2209d37bc48f69a3937bb1a568003f00a66709bea980bc5598f632bf301852149bba24d1d782e86ffca5cc066367f0a3791cd51a6aef3e5
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/muscle/files/3.8.31-make.patch b/sci-biology/muscle/files/3.8.31-make.patch
index 7c0e7308df54..fa3f5c3a014b 100644
--- a/sci-biology/muscle/files/3.8.31-make.patch
+++ b/sci-biology/muscle/files/3.8.31-make.patch
@@ -1,7 +1,5 @@
-diff --git a/src/mk b/src/mk
-index 475d25a..d4b7e83 100755
---- a/src/mk
-+++ b/src/mk
+--- a/mk
++++ b/mk
@@ -5,17 +5,14 @@ ObjNames='aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln
rm -f *.o muscle.make.stdout.txt muscle.make.stderr.txt
for CPPName in $CPPNames
diff --git a/sci-biology/muscle/muscle-3.8.31.ebuild b/sci-biology/muscle/muscle-3.8.31.ebuild
index 1e62a9d28eee..72c9a2c7e178 100644
--- a/sci-biology/muscle/muscle-3.8.31.ebuild
+++ b/sci-biology/muscle/muscle-3.8.31.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit eutils toolchain-funcs
+inherit toolchain-funcs
MY_P="${PN}${PV}_src"
@@ -14,19 +14,18 @@ SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="amd64 ppc x86"
-IUSE=""
RDEPEND="!sci-libs/libmuscle"
-DEPEND=""
S="${WORKDIR}"/${PN}${PV}/src
-src_prepare() {
- epatch "${FILESDIR}"/${PV}-make.patch
+PATCHES=( "${FILESDIR}"/${PV}-make.patch )
+
+src_configure() {
tc-export CXX
}
src_install() {
- dobin "${PN}"
+ dobin muscle
dodoc *.txt
}