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author | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
commit | 40aaaa64e86ba6710bbeb31c4615a6ce80e75e11 (patch) | |
tree | 758c221bad35c9288d0bd6df9c7dfc226728e52c /sci-biology/mothur/mothur-1.27.0-r1.ebuild | |
parent | 8d5dbd847cbc704a6a06405856e94b461011afe3 (diff) |
gentoo resync : 28.04.2021
Diffstat (limited to 'sci-biology/mothur/mothur-1.27.0-r1.ebuild')
-rw-r--r-- | sci-biology/mothur/mothur-1.27.0-r1.ebuild | 35 |
1 files changed, 17 insertions, 18 deletions
diff --git a/sci-biology/mothur/mothur-1.27.0-r1.ebuild b/sci-biology/mothur/mothur-1.27.0-r1.ebuild index 9e9bf2160310..12b628475aac 100644 --- a/sci-biology/mothur/mothur-1.27.0-r1.ebuild +++ b/sci-biology/mothur/mothur-1.27.0-r1.ebuild @@ -1,43 +1,42 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic fortran-2 toolchain-funcs +inherit flag-o-matic fortran-2 toolchain-funcs DESCRIPTION="A suite of algorithms for ecological bioinformatics" HOMEPAGE="https://www.mothur.org/" SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip" +S="${WORKDIR}/${PN^}.source" LICENSE="GPL-3" SLOT="0" -IUSE="mpi +readline" KEYWORDS="amd64 x86" +IUSE="mpi +readline" RDEPEND=" sci-biology/uchime mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - app-arch/unzip" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip" -S=${WORKDIR}/Mothur.source +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-overflows.patch +) -pkg_setup() { - fortran-2_pkg_setup - use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX) +src_configure() { + use mpi && export CXX=mpicxx || tc-export CXX use amd64 && append-cppflags -DBIT_VERSION } -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-makefile.patch \ - "${FILESDIR}"/${P}-overflows.patch -} - src_compile() { - emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline) + emake \ + USEMPI=$(usex mpi) \ + USEREADLINE=$(usex readline) } src_install() { - dobin ${PN} + dobin mothur } |