diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-01-16 20:27:28 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-01-16 20:27:28 +0000 |
| commit | 2fd57282f0262ca084e05b0f2c63fbada395d02b (patch) | |
| tree | 4e0f23cea9ce9fd972e70ebc5214bf36fed465cc /sci-biology/gibbs | |
| parent | c3bc61051d7f12b4c682efa7a5460bbc8815649e (diff) | |
gentoo resync : 16.01.2021
Diffstat (limited to 'sci-biology/gibbs')
| -rw-r--r-- | sci-biology/gibbs/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch | 11 | ||||
| -rw-r--r-- | sci-biology/gibbs/gibbs-3.1.ebuild | 47 | ||||
| -rw-r--r-- | sci-biology/gibbs/metadata.xml | 13 |
4 files changed, 0 insertions, 75 deletions
diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest deleted file mode 100644 index 2475c8e59888..000000000000 --- a/sci-biology/gibbs/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX gibbs-3.1-fix-CFLAGS.patch 213 BLAKE2B 9a0f7f0412569cef1cce984f5087f7b99e16163ac6c6c3e0aad27f14cd2f7ed5bfb22f21f433f1c343a9e73899dedb00ea93467adc4cc42a3dceae41aa1e3f86 SHA512 afd0fffb891eefe8799025a032a802f398ac737900e1fac86f79964bfe493ee906c3e5f42abc5e45d3de5af80887ab25ef207a885a6ddb8b6fe0d0ab1f906046 -DIST gibbs-3.1.tar.gz 563300 BLAKE2B 74b97407ccdac49d19dd2fa5fe3a5384b52a3ae871f197c1212e818fb7ce2307f2d04a91cf8a1d14c82d57b6f7266bbae849091bec9e580b8d473b595a836212 SHA512 b1ffc0d0c7debaced3c3d850eb7d2c42e13358d1e7c6ff5e6be0273446edc50bd655c52c5ae904a9054d47d7a48abd54a7684534ba7681375b657ad77fb8cb52 -EBUILD gibbs-3.1.ebuild 912 BLAKE2B 29d51a769e6a477bb81da6d467a1b2befbfd2f83282184a1087de0a4a5d736a5df01f3767663141bd6282826bd4fcad5ca0ddaea916fc93e582ccd8b4a8e98b8 SHA512 975c0bd3c57a8db25324636ce8f2fd9ef9bde1de4a980ba93fbe3e7bf8362a51f06ae5b1687570d81012ef6eed6536bfde418327a045bcf54a1e1517d85d989f -MISC metadata.xml 484 BLAKE2B d9cd3734d282126d0c50a2b4ac64e5f7dc584150e47a02fad550b3b4e3102018d95c0d226967dae006523ed37da4f3b33a89e6911d237aed54af8a923c7d5f45 SHA512 9a540d968cae036719647f394219ec70184bf956d1c6e6b86e32218426800bad998619e11094ca0d80714b6bbf5b9f37c3edc1397755e0c34bc8b63a16a43655 diff --git a/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch b/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch deleted file mode 100644 index 6eaad637cfc8..000000000000 --- a/sci-biology/gibbs/files/gibbs-3.1-fix-CFLAGS.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/configure.in -+++ b/configure.in -@@ -51,7 +51,7 @@ - fi
- ])
-
--CFLAGS="$OPTFLAGS $MPIFLAGS -Wall -Werror $MACFLAG"
-+CFLAGS="$CFLAGS $OPTFLAGS $MPIFLAGS -Wall $MACFLAG"
-
- AC_PROG_CC([$COMP_LIST])
-
diff --git a/sci-biology/gibbs/gibbs-3.1.ebuild b/sci-biology/gibbs/gibbs-3.1.ebuild deleted file mode 100644 index a06d0880ee4d..000000000000 --- a/sci-biology/gibbs/gibbs-3.1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools - -DESCRIPTION="Identify motifs, conserved regions, in DNA or protein sequences" -HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html" -SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="mpi" - -DEPEND=" - mpi? ( - virtual/mpi - sys-cluster/mpe2 - )" -RDEPEND="${DEPEND}" - -PATCHES=( "${FILESDIR}"/${PN}-3.1-fix-CFLAGS.patch ) - -src_prepare() { - default - mv configure.{in,ac} || die - eautoreconf -} - -src_configure() { - use mpi && export CC=mpicc - econf $(use_enable mpi) -} - -src_install() { - default - - exeinto /usr/$(get_libdir)/${PN} - doexe *.pl -} - -pkg_postinst() { - einfo "Supplementary Perl scripts for Gibbs have been installed into ${EROOT}/usr/$(get_libdir)/${PN}." - einfo "These scripts require installation of sci-biology/bioperl." -} diff --git a/sci-biology/gibbs/metadata.xml b/sci-biology/gibbs/metadata.xml deleted file mode 100644 index a0cd7b42b3ab..000000000000 --- a/sci-biology/gibbs/metadata.xml +++ /dev/null @@ -1,13 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> - The Gibbs motif sampler stochastically examines candidate alignments - in an effort to find the best alignment as measured by the maximum - a posteriori (MAP) log-likelihood ratio. - </longdescription> -</pkgmetadata> |