diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
| commit | 5bb9ff1ee56d2b5e75e01a7f066d8b0cec84ec02 (patch) | |
| tree | 66e860a5099bcad013f1cf667255dc372a7c11b3 /sci-biology/embassy-clustalomega | |
| parent | 7218e1b46bceac05841e90472501742d905fb3fc (diff) | |
gentoo resync : 20.03.2021
Diffstat (limited to 'sci-biology/embassy-clustalomega')
3 files changed, 21 insertions, 18 deletions
diff --git a/sci-biology/embassy-clustalomega/Manifest b/sci-biology/embassy-clustalomega/Manifest index 8e2a97e9203f..1ef5f7347551 100644 --- a/sci-biology/embassy-clustalomega/Manifest +++ b/sci-biology/embassy-clustalomega/Manifest @@ -1,4 +1,4 @@ -AUX embassy-clustalomega-1.1.0_fix-build-system.patch 2860 BLAKE2B 0a88c8315e40df48d18ef2ca6b5d8e0c266720c852cbe8dac681ceb8802b4b7e6ba18cb1064be5a979b82c37f1a7b83ef445e84ac3dda143e7e2bd2b5f627d10 SHA512 6b1c8a2915c9c48ec203bc131461b9acecc3948da79f36941e2fd97a22bf044a35ee717e0be0b13f46d8a6f81148c29faa1e048ed4066cf768dbc705141a772d +AUX embassy-clustalomega-1.1.0_fix-build-system.patch 2775 BLAKE2B 03c93a180b5bd19d74196a17e093df54a82ad70378222c04041274477f16a94bff901ff4d31b36df3597d6bb6a2e96750688a5e279d2f83b2e745cb82cd18549 SHA512 bbdf887e87e00c5f82f964ffda547ce0437795d13ecb73255901028c1e45def1a5a02decf5cd7be045985cf125669cafb00617def6cc2b5ec543aadae1dfb547 DIST embassy-clustalomega-1.1.0.660.tar.gz 618177 BLAKE2B 5d3f300a0dd825c92c3f953219b2ae8be271a7d89a1237980571b3f9a9027d6a0191ad9e61be87d1ad3334ddd56f9ff11c05d3e277683dc8cdfe511ef3739877 SHA512 fc16f9505e0300ae184e292fb1d96ce6b90eaf80298f847769466a84726d10ea58e3f4c14ed21a9e2c36d7fa533c7ad248b4995bf41c8abbd0fed1faf1fd4801 -EBUILD embassy-clustalomega-1.1.0.660.ebuild 384 BLAKE2B 5896e2a2c95a3c3c126437af70f13cd16ab286dbf600784600859a32fb8ae26c3f791712d114945dbdc8f6984f47c734b560c62df150e4a1a0b0da30f1820eab SHA512 8504bb9294da8a76c23114476fc16a011c45380b5f0f243bcf5a3bc68db6fd71fb7156f450ee14f78ec7825f8ecd46f4b0a7d0764c3dfd7ba1a2939026b123a4 +EBUILD embassy-clustalomega-1.1.0.660.ebuild 381 BLAKE2B 35ffd764e71b73b85110065818095193d822955fa9890e5e9076e09cade350980d1bcf41ee38b56b363c6dea6ca081dbf0f55ae75c474e08c7ef5555d5a330a0 SHA512 58e8112f9d645a058bc40523b6690673dfc0c0870b8b5495dd8121acd5209896a5ee3ac8c89799188635366df4a50631baeffc2d29ab5278c2e52c46e5736bfa MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-clustalomega/embassy-clustalomega-1.1.0.660.ebuild b/sci-biology/embassy-clustalomega/embassy-clustalomega-1.1.0.660.ebuild index 2d2a2c62632c..93092e9f884e 100644 --- a/sci-biology/embassy-clustalomega/embassy-clustalomega-1.1.0.660.ebuild +++ b/sci-biology/embassy-clustalomega/embassy-clustalomega-1.1.0.660.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 EBO_DESCRIPTION="Clustal Omega - Multiple Sequence Alignment" diff --git a/sci-biology/embassy-clustalomega/files/embassy-clustalomega-1.1.0_fix-build-system.patch b/sci-biology/embassy-clustalomega/files/embassy-clustalomega-1.1.0_fix-build-system.patch index 5525d79b525f..7f92130fb501 100644 --- a/sci-biology/embassy-clustalomega/files/embassy-clustalomega-1.1.0_fix-build-system.patch +++ b/sci-biology/embassy-clustalomega/files/embassy-clustalomega-1.1.0_fix-build-system.patch @@ -1,12 +1,6 @@ - configure.ac | 49 +++++++------------------------------------------ - src/Makefile.am | 6 ++---- - 2 files changed, 9 insertions(+), 46 deletions(-) - -diff --git a/configure.ac b/configure.ac -index f12ed19..b143922 100644 --- a/configure.ac +++ b/configure.ac -@@ -635,33 +635,6 @@ AS_CASE([${host_os}], +@@ -635,33 +635,6 @@ @@ -40,7 +34,7 @@ index f12ed19..b143922 100644 dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL +@@ -737,21 +710,6 @@ @@ -62,7 +56,7 @@ index f12ed19..b143922 100644 dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], +@@ -874,6 +832,13 @@ AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) @@ -76,11 +70,9 @@ index f12ed19..b143922 100644 # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -diff --git a/src/Makefile.am b/src/Makefile.am -index 9135679..c201149 100644 --- a/src/Makefile.am +++ b/src/Makefile.am -@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ +@@ -17,9 +17,7 @@ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -91,10 +83,21 @@ index 9135679..c201149 100644 endif if ISSHARED -@@ -62,5 +60,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ +@@ -34,7 +32,7 @@ + -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \ + $(NLAIXLIBS) -leplplot + else +-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \ ++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \ + -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot + endif + endif +@@ -61,6 +59,6 @@ + ../../../plplot/libeplplot.la \ $(XLIB) else - LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ - -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ + -lajax $(NLADD) $(XLIB) endif |