reinit the tree, so we can have metadata

4 files changed, 107 insertions, 0 deletions

diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest
new file mode 100644
index 000000000000..0f69514f9a9d
--- /dev/null
+++ b/sci-biology/clustalx/Manifest
@@ -0,0 +1,7 @@
+DIST clustalx-2.1.tar.gz 341649 SHA256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 SHA512 e8cbad783722161de6999ab01a91d555fc10db609197a8d2878f91e9d7dc998784c02d2ccb54c4936ee27b41321db6f4f37021221662f483b8b6d945b6e1c026 WHIRLPOOL 6cbe8dcf2be3a535e8ac0ef0b9b476d4429a80bd94b394c0194f46ed039f9ac2b97b0ec2ed680838a0973b3187b2dbc90285733657975e03288b9840ba3d6b15
+DIST clustalx.png.xz 74808 SHA256 7d333fd7e96ebc5709ec061e6be4123aba764a6127133cc8df5452f62e0d1cf3 SHA512 0907710c944fc1b883c58501cd7bc2abbc5bf171495b58dbe9829d60d7c3530c210f89a5bfafc3cec03808ae50f5c9a78ce37b9175c2e37590494e115e8e343a WHIRLPOOL 7d48b4be3ec61d3bd3017a0c0dbf0c3d3970b338cc1050a9c4173d06d268996a733c4a19202fba13e2cd640b72f02ecc9013198a821791edd820f16b5371d234
+EBUILD clustalx-2.1-r1.ebuild 1093 SHA256 b4f39abd38f9ebbc9a4c178a6ec6837eb99d4a6a74d9844d28a7fbeefdd193bb SHA512 997c71482dff6f73841ba912904b9ea34992ffd9dc90466e233017857a93c11a2f930ff242bfc0b1309bedbf4e6be2556bf26efa9a9f7dfe83d0e96abc06e8a0 WHIRLPOOL 95803878825a337224afc5262ee6a2549f1458433065509afb10548a6d578256ce1c0d62cf13a72bbcf33a9e5670bfbdd25d3a3831f313817b9e08c50c4544e7
+EBUILD clustalx-2.1-r2.ebuild 1225 SHA256 bd6017020c3dadd734c715ce3a84ff53e7b42757d3e8276b4553d7e764cc33b0 SHA512 6d0d46521bc2511dca32363e7faf6ff550de74f6e6fcf22f0d3ebd7cbe0f10884dbdb52fcfcba034b4185419d2109663bf1e589d072937b6bbc012fe5ad5c250 WHIRLPOOL 2003f17749c8a87a215fbe05559b1786b40b506ebbed6ccc55298469e9aa7d907156f6c681ee991b8aa6d7517f50c9bd6e70d1f4a830d125ba8b38439b21a926
+MISC ChangeLog 2435 SHA256 b33fcdca9b59ad94c7d48e3dab398f739247e3eb2ba919fb961c12612de3f2cc SHA512 5a7fbb5e2f10c495d2c04222a4e194b5e739b03bfd97fff85f604975ddbabb628d2dfe7b9fce774f480d4b517a455a4da30daaf63b6152bef1b51d44638f643a WHIRLPOOL f95f113d6410eea87655d67ad7a7e29593459bbbccb0bc265195d12fd8d0769c885888d21f71c3766a6875b333c14dcd90288262ea694a5629a6a9b1ee8c13ea
+MISC ChangeLog-2015 5285 SHA256 488232e993e1a5d379fd4335175226efa20b7a19d120c84aa2b23406409abf15 SHA512 07c2a77c647da4bedf95a9f353de9353f90f51b838379a0eef96d401ecd073688283991a200cf1d0b93e726db3d38dd60c1def58b1ba132a1ccf65efad328e7f WHIRLPOOL 984359f1319c3a55cf2cf722c026e65405d749287b5367b9379a82502bcf0ce0911ade41d6e2fab8ecae30b77d81d7bb5be2d43079033c964f395dd26e9fe8fc
+MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13
diff --git a/sci-biology/clustalx/clustalx-2.1-r1.ebuild b/sci-biology/clustalx/clustalx-2.1-r1.ebuild
new file mode 100644
index 000000000000..1d3ce97d942d
--- /dev/null
+++ b/sci-biology/clustalx/clustalx-2.1-r1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit eutils qt4-r2
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz"
+
+LICENSE="GPL-3 LGPL-3"
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE=""
+
+DEPEND="
+	dev-qt/qtcore:4
+	dev-qt/qtgui:4"
+RDEPEND="${DEPEND}
+	>=sci-biology/clustalw-${PV}"
+
+src_prepare() {
+	sed \
+		-e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
+		-e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
+		-e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
+		-i ClustalQtParams.h || \
+		die "Failed to patch shared files location."
+	sed \
+		-e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
+		-i HelpDisplayWidget.cpp || \
+		die "Failed to patch help file location."
+	rm -rf usr || die
+}
+
+src_install() {
+	dobin clustalx
+	insinto /usr/share/${PN}
+	doins colprot.xml coldna.xml colprint.xml clustalx.hlp
+	make_desktop_entry ${PN} ClustalX
+}
diff --git a/sci-biology/clustalx/clustalx-2.1-r2.ebuild b/sci-biology/clustalx/clustalx-2.1-r2.ebuild
new file mode 100644
index 000000000000..6e9643755b69
--- /dev/null
+++ b/sci-biology/clustalx/clustalx-2.1-r2.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit eutils qmake-utils
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="
+	http://www.clustal.org/download/current/${P}.tar.gz
+	https://dev.gentoo.org/~jlec/distfiles/${PN}.png.xz"
+
+LICENSE="GPL-3 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+	dev-qt/qtcore:4
+	dev-qt/qtgui:4"
+RDEPEND="${DEPEND}
+	>=sci-biology/clustalw-${PV}"
+
+src_prepare() {
+	sed \
+		-e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
+		-e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
+		-e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
+		-i ClustalQtParams.h || \
+		die "Failed to patch shared files location."
+	sed \
+		-e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
+		-i HelpDisplayWidget.cpp || \
+		die "Failed to patch help file location."
+	rm -rf usr || die
+	default
+}
+
+src_configure() {
+	eqmake4
+}
+
+src_install() {
+	dobin clustalx
+	insinto /usr/share/${PN}
+	doins colprot.xml coldna.xml colprint.xml clustalx.hlp
+	make_desktop_entry ${PN} ClustalX
+	doicon "${WORKDIR}"/${PN}.png
+}
diff --git a/sci-biology/clustalx/metadata.xml b/sci-biology/clustalx/metadata.xml
new file mode 100644
index 000000000000..959160fe46b1
--- /dev/null
+++ b/sci-biology/clustalx/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>