diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-02-05 18:44:56 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-02-05 18:44:56 +0000 |
| commit | 29aabba0ea759c6a2864ff5631735b67ee38e5e0 (patch) | |
| tree | ab466b4dfa7abecb401b2f8039d08af4689306bb /sci-biology/bwa | |
| parent | d42200bec37eef2a7478d88988ff00addd0a9202 (diff) | |
gentoo resync : 05.02.2020
Diffstat (limited to 'sci-biology/bwa')
| -rw-r--r-- | sci-biology/bwa/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/bwa/bwa-0.7.16a.ebuild | 10 | ||||
| -rw-r--r-- | sci-biology/bwa/files/bwa-0.7.16a-gcc-10.patch | 7 |
3 files changed, 15 insertions, 5 deletions
diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest index b32ba62e73bc..ff09184da36d 100644 --- a/sci-biology/bwa/Manifest +++ b/sci-biology/bwa/Manifest @@ -1,4 +1,5 @@ AUX bwa-0.7.15-Makefile.patch 933 BLAKE2B f62d9b7f8c55ed55f9d6b63628ddc89077e8e01bb2c99e1c215374fd05114e2007ada0867d629c0b9edf2a700299dc6ad1bc736e5b0a2ae143695c03625d5532 SHA512 d76d6aac355b2ad52d3aa1ca59defc33017cfbdcec96939db4807acf7f35d6bcd4e21728998fb0fd3633742cfd9edaa7b62ab1eaff26829296967fefdbc185b4 +AUX bwa-0.7.16a-gcc-10.patch 126 BLAKE2B 366d380329b7e4317c3145b5f3b0ed5aed00383ffd839129955a5c9c6e24473b1d655f0322eba94d5d35dd635b9bc8f739e3515f05d9e915cdf172a838429b54 SHA512 93e357c616666004c332a9cc425c5b57bd1a72accd0ce5ed111847cfa3b4f3125d65907919e3b792dd58061677a4f66b0413039b040d9e911e75b8fecf370db0 DIST bwa-0.7.16a.tar.bz2 190773 BLAKE2B e1064381b6b1aa4c9b78d12222c7b783a55676a163b94ad8596a2af64c9b0d60bbebd8e840aaa13b25e1ca4f10466c2c39c99830f1ca58e558d724d1ad583944 SHA512 8bbe223f79efd328d66adb88baf995e894f5944aad912ac1b464dc84dc9b4e22ddf77b60dcbe468e0eedc344ee58d08dc498777f0d2794a2c1e0ddd33dad606d -EBUILD bwa-0.7.16a.ebuild 667 BLAKE2B 145d99a62adf8f42eeace08892bea3024d13cfd723ff136c055144227526a8563c97cff5b79fd0e48bfdd4a0b73911faa7862368f7c64f0f4c9b4b86e92188ce SHA512 16abfaeabcec740ba001eb2c34c6bda6c464698319f7d206fad7b2b5905636885e51cac4eacaa4b4e6c80fcb38f50d6a78a8a06ab977e0632f0cc1b8fbef8632 +EBUILD bwa-0.7.16a.ebuild 699 BLAKE2B 3dbbd9aa120126cf4856fe2ee361e025d176545b52dfdd643f945d99146ad73ec2d1b4ea8a51fc8724c2ea441b50f0525cf9ffcde74d3a6aac26a1cbb6a5a366 SHA512 40cfd075cb3514217bcf35481e76336d13b45ebd3622c8ffe697e63bf73fab5891542bc02313a9b1114827e5e59cede785bc7c248c75b6659c1d7589b0aabd76 MISC metadata.xml 348 BLAKE2B f6e4a9e3beee19fa7b231fdf89cbed2f0bcb96eddb8e7be4d47b0f6f78253ad747e89f803edc5b929536c02993b654af5933c1d4470284484d83c6724b38656e SHA512 512439b23a870d55169998b035a6f9d8a10c0746c7e20d1f969a11a7b98eef297e71fc8fdf600a20f321e1f95a2c763d3e98ff4f089952eec38138ebf0291c6a diff --git a/sci-biology/bwa/bwa-0.7.16a.ebuild b/sci-biology/bwa/bwa-0.7.16a.ebuild index 21fe67143bd2..b29bf210169a 100644 --- a/sci-biology/bwa/bwa-0.7.16a.ebuild +++ b/sci-biology/bwa/bwa-0.7.16a.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit toolchain-funcs @@ -11,12 +11,14 @@ SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2" LICENSE="GPL-3" SLOT="0" -IUSE="" KEYWORDS="~amd64 ~x86 ~x64-macos" RDEPEND="dev-lang/perl" -PATCHES=( "${FILESDIR}"/${PN}-0.7.15-Makefile.patch ) +PATCHES=( + "${FILESDIR}"/${PN}-0.7.15-Makefile.patch + "${FILESDIR}"/${PN}-0.7.16a-gcc-10.patch +) DOCS=( NEWS.md README-alt.md README.md ) src_configure() { diff --git a/sci-biology/bwa/files/bwa-0.7.16a-gcc-10.patch b/sci-biology/bwa/files/bwa-0.7.16a-gcc-10.patch new file mode 100644 index 000000000000..40056ffeaaa9 --- /dev/null +++ b/sci-biology/bwa/files/bwa-0.7.16a-gcc-10.patch @@ -0,0 +1,7 @@ +--- a/rle.h ++++ b/rle.h +@@ -32,3 +32,3 @@ extern "C" { + +-const uint8_t rle_auxtab[8]; ++extern const uint8_t rle_auxtab[8]; + |