gentoo resync : 26.11.2017

1 files changed, 14 insertions, 16 deletions

diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest
index 155be157845f..53a8d4da6c03 100644
--- a/sci-biology/bowtie/Manifest
+++ b/sci-biology/bowtie/Manifest
@@ -1,19 +1,17 @@
-AUX bowtie-1.1.2-_ContextLss-1.1-1.4.patch 601 SHA256 3fc2e55806824558c12e7d3ae3f4be77f9897f222e1de06c3ab39dff74fa7ad7 SHA512 e39ec6323cc6fee49a6ecf3565066d9cb8f8001af2701de292025f268d57dcfa3d4c35f3e2aed56b7e3835a955e5bfb595214ac232309fcc46c6d51f83cd9f2e WHIRLPOOL 5a65ab3bcf49679ff9dbc0225415a3664e924622f706605f00ea32c157b9f87f2d0eb13322f60c0b327c7395a9865515d8241ddcaf6b764a76053f67765ade24
-AUX bowtie-1.1.2-fix-setBegin-call.patch 1269 SHA256 ccf253e4b2fddef2a199e9fe2b93519f579c5b16e5a002723868ffaad3b07cc5 SHA512 8838a0d8b35c9ceb4be1ef3439eab5e3478dcfe11c5e59e327717676eceab413b07ec97dbda9fb3527ab61653a8a6e2d651b5bb4c24114288d3b07922348c5d3 WHIRLPOOL 165a698c19394e5dae98ba707352e2f35a89c1cbf9f71bfae55f020fab262d8624b0edd34282447afdb29a4e0b155ee4771c3d922e86037d4c14be1b3cee7de0
-AUX bowtie-1.1.2-seqan-popcount.patch 566 SHA256 a234e69880033368f6d5e7ba193230161054ac638200ceaec43136b934b17b9a SHA512 07b70a1941b98033967b8a7303fab94aa3a047bd5da9355f58f03af04f4515903cbf2698700fb3e987546998ebb28225672aa8fbfc65dd8bc202be8a26290838 WHIRLPOOL d74c3f739d1ee6b6c41630a83475af28de3df1316a924ecb8e6bf0ca198866c0a49c0d662d7a830bdd9824de27fce192c1feb26abd239515a4ae1bfe8977df8a
-AUX bowtie-1.1.2-seqan-rename-ChunkPool.patch 11618 SHA256 fdbbe8921a3a30845d63b08ee91826db307a01325c691935a5133198dff4123b SHA512 3d05ea37c753c780163123ab8fdf8d149f0daddf4c52fcf81b1380951f132edf312b13505ea9afc2ff34ee4f3188b5251beb9e71e3c78f2eeabfadd4ab1ae5a1 WHIRLPOOL 13a4380084839fe379ee3a416653061d9f5e9f78252b0cbbf7b5ab647011ca23db20cd7d6f3376031c3a2ec4f5a172086fa6e6c9b1a634233d40bd4b3f1ef0d9
-AUX bowtie-1.1.2-seqan-rename-fill-to-resize.patch 3280 SHA256 a6346c3ed273541700c996c5524fd4c10b91d80fb3d7681f824150475b6e76e8 SHA512 e0a96c870670c6c38b48da0c0e0f3dc4f5e9b0654ecb1d55c22484472192cc926168a333625a582c470e2781f6e062d6704723feb29d7f32f2a19eb229622aa0 WHIRLPOOL 019948a27497a3f94bd7843768e4708e97ff8644a1ba57c8f57364539c1855c45896459471fe3efd612b107f9dc4d0f0d988c72201c78fd7d511ceb25a016d4c
-AUX bowtie-1.1.2-spelling.patch 4157 SHA256 8919cee874b79a48cf6a2fac4354fb27dfe0037e914c5a1a635410d99646c865 SHA512 1679ecdaffa55adb2c1e206a77eba6052e4d9e65e476f73df795bf1fc9e323d34c20f4673a285701b067c65477b3804cd44a4c30b36ae5502f534a4cf191af18 WHIRLPOOL 45b8c72d54536c739626756315105702af6eca7315fc70919cb645fb0234e09b2e800aeacd13f4491d598ad8245d6cc6a7ed3d3bc370430f555ccc60aa933b77
-AUX bowtie-1.1.2-tbb-tinythread-missing.patch 554 SHA256 d0cdf86a1b40971879eb39fcb627680eff785321a1e5265203f6f3dfca133d2b SHA512 04cc9dad3a6c2598bde41975604a75ca5f0b1490144d2a9f91c049b04b8af80d95e8842aaf1b551ec3d9ca842981e72aa692f00b80971c067d7464776c1e78c9 WHIRLPOOL 0404e2c61d6bd932803aefdd179aa2d9fe2dfc8779e2163ef4e550b646794d8d69ec675a676e030b3c878d78f5a9e75d8b33ff2865e310222006d8880dd016af
-AUX bowtie-1.1.2-unbundle-seqan.patch 751 SHA256 924d42e96e768393e29d1aeb2a48b4999f09d214b874e0f67216348429b90bd2 SHA512 9a68ccc98774a2c9ddb8f45b5ed009230d14d3e29837c6dd8aac34e298f57208361ef45d0e7d9d074495f3465b58f08606cced9e4fccb549785591ff954cb2b8 WHIRLPOOL 4f35e43c6164e58e7035984cd7de3b7255d752425b25b172cc822a5d3189c20c0c5b23ebd74de5907e63e1370ecd1f64bbe4d046543d34229bbf19c4ee3c4749
-AUX bowtie-2.2.9-fix-c++14.patch 687 SHA256 01ca17aa56cedf1743e85e20fc67fa60a4591af3415ebeff8b6b897392de20dc SHA512 3aa6e7a30fdf93ae564091ce9b87338ab9feccbd0c873f4130af71dc94fd3b27527b42a93f13471a2613bad44dbacd639d17515000f03856695a0021ce14dfc5 WHIRLPOOL 78040c29a564128d7df46f5e90e12a47620479a34d88a051293280605e930f99ca2ddfa96e22652b758f43002ad02f309c11cfc7bba13591c198d170b7b94038
+AUX bowtie-1.1.2-_ContextLss-1.1-1.4.patch 601 BLAKE2B 36de166ef2f22d6a6cf9a5773d62f74bd69241b2a788f376108f847f09be0811b4c0156e8a5ded0e0f724cdffa77ed0b79ade064c0268b91ff966319ac2c0d0d SHA512 e39ec6323cc6fee49a6ecf3565066d9cb8f8001af2701de292025f268d57dcfa3d4c35f3e2aed56b7e3835a955e5bfb595214ac232309fcc46c6d51f83cd9f2e
+AUX bowtie-1.1.2-fix-setBegin-call.patch 1269 BLAKE2B 3bfa4fca8a94c600f6d405c4824cc83ac5838c0353f3e36417bdb1e88222902f786fe6f8e3e5099f577ca5044b2caf5d9eaf64876311ea9df4a5d4314bd22f03 SHA512 8838a0d8b35c9ceb4be1ef3439eab5e3478dcfe11c5e59e327717676eceab413b07ec97dbda9fb3527ab61653a8a6e2d651b5bb4c24114288d3b07922348c5d3
+AUX bowtie-1.1.2-seqan-popcount.patch 566 BLAKE2B 6d9d109fbbba2b85d22c923959ca0726cb9bb2da950b0b0b9aa84106c9b74c24d5bf997d1339273f92cffc5bf42c9852bf376dce260c1374c3374f8f230e395d SHA512 07b70a1941b98033967b8a7303fab94aa3a047bd5da9355f58f03af04f4515903cbf2698700fb3e987546998ebb28225672aa8fbfc65dd8bc202be8a26290838
+AUX bowtie-1.1.2-seqan-rename-ChunkPool.patch 11618 BLAKE2B bc4e9610bdde7dba741c7963c59f0361cca43e6224d1c4f2448d53111cbb0ac2d0cbd45a8d90948689bf0af1c511f180839a0b981c1588dda2f52f3a2e06a0d6 SHA512 3d05ea37c753c780163123ab8fdf8d149f0daddf4c52fcf81b1380951f132edf312b13505ea9afc2ff34ee4f3188b5251beb9e71e3c78f2eeabfadd4ab1ae5a1
+AUX bowtie-1.1.2-seqan-rename-fill-to-resize.patch 3280 BLAKE2B 00815454c116bc8b64a96668508fdddbf9909aefea84353031524eef479e60a540ed74512ca7c4e62d41e6bea4bed60cf102621390070b4f45bc63abcb2b20dd SHA512 e0a96c870670c6c38b48da0c0e0f3dc4f5e9b0654ecb1d55c22484472192cc926168a333625a582c470e2781f6e062d6704723feb29d7f32f2a19eb229622aa0
+AUX bowtie-1.1.2-spelling.patch 4157 BLAKE2B 2a48f2da1e68df166230fe35f9858b34b86962d97ec7d36a9bc0b19615961623ff2403dc630dae4cb2d4ade439b4b487762ac7be32efb7947dee3b2bb919d7a1 SHA512 1679ecdaffa55adb2c1e206a77eba6052e4d9e65e476f73df795bf1fc9e323d34c20f4673a285701b067c65477b3804cd44a4c30b36ae5502f534a4cf191af18
+AUX bowtie-1.1.2-tbb-tinythread-missing.patch 554 BLAKE2B 745629aa93f2e74191b944345b95b4d2e4e399a9e5c5a0f48690d3abe411076e4f71603333ff70050af8c63c2a9dcb753d1e9ceb1fa2ec066b9002a7f71ea96f SHA512 04cc9dad3a6c2598bde41975604a75ca5f0b1490144d2a9f91c049b04b8af80d95e8842aaf1b551ec3d9ca842981e72aa692f00b80971c067d7464776c1e78c9
+AUX bowtie-1.1.2-unbundle-seqan.patch 751 BLAKE2B d9689b298f21f4619dbbed96b58d8ae7fc5f646539ae33291222d282153b545ad6fb3e30fe1ba5f0f452e2f3e7e9706b6761f5d4184dcd5ad96a55ccc7b246be SHA512 9a68ccc98774a2c9ddb8f45b5ed009230d14d3e29837c6dd8aac34e298f57208361ef45d0e7d9d074495f3465b58f08606cced9e4fccb549785591ff954cb2b8
+AUX bowtie-2.2.9-fix-c++14.patch 687 BLAKE2B a75f473f429379789a97142d7820fb19fc1a64b764236c6fa1c068cefb03e37a58b41b0a515a62d42e85b3131f0dfe8f2bb856126528099277394674a0e53248 SHA512 3aa6e7a30fdf93ae564091ce9b87338ab9feccbd0c873f4130af71dc94fd3b27527b42a93f13471a2613bad44dbacd639d17515000f03856695a0021ce14dfc5
 DIST bowtie-1.1.2-src.zip 7713258 SHA256 b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae SHA512 3d3d69bc3a865bb577b5a91440215d0d5b606c7a8751d565e606e36adbfbdef695b1718ae81cd3e2682a39ca7784c4d00976441e7618264ad99b04c7f53c36e8 WHIRLPOOL 08cb824bf7a1ddfbe6692de67191aacf44776d7d4e0ab66bd2a13ecfffd087bc28cdde4c7285c781fa4759de0a239e68f87b702bcc2e24c9b81fda5804360ce7
 DIST bowtie2-2.2.6-source.zip 5728779 SHA256 1000e90cdd90c3ca43c69d0d0ad951e190d36a6981a546f430a90ce86d64bfc8 SHA512 3ab5a5475cf214affd91e0d1782fd2d6dedccd979e3c809b5dfb272726d99ff1c7b59d92e387b187a7c2e43557786a1085186ccb96588de91212caf2eb94ce4f WHIRLPOOL 4fb02b3a0d76bbee0fe9abf91a71405922568bc38e593d5740df6279bad6f8b668df0debb0a81f3d3c23623558f34d842dd662a6838cf2d7f0fc8945fd00a298
 DIST bowtie2-2.2.9-source.zip 5734235 SHA256 35b3cd8efc4c1c1efac6d94e626183bf4f8608b3a745fedd294c8fba46308201 SHA512 ead8f7641f3231638d986f9e500bc4ec7afe1e542048465bfcc2e93e2b2d2e499f0dd8aa5c1e3e21df285c9d195b187682eb7e12be4a408f6c50fb97c0e0a205 WHIRLPOOL ed8894096997ddd724c8999971a82b14bfa8149a23c040463c6f347ddce070a8c44baeb21bc1adc41a756e0e02c8f4861b967477c2f3469a71ca58b7d3e60aac
-EBUILD bowtie-1.1.2-r1.ebuild 1643 SHA256 4cbba0d38dc3094a3adff5f655c59309436c5ace75d52d679afe502d3fa5c7a0 SHA512 8b5c22f29aafb5977313ea002fcd654ac991015f7808f02f8e02c2105dd9a6fa77b5f5342e82d38b07674c93dbe397333be78f6d1ca9a24a60531d6a40efe382 WHIRLPOOL 5f5a1e20bfbb76f05a6ddfe4820171475960d4c8220eae02851792eb6db25f7f5dbed032ad9d6b506dd34d803e91b108178d94788b2f6445bfec41940e76ae3c
-EBUILD bowtie-1.1.2.ebuild 1058 SHA256 03ee85685829ea13e4881cc3c1c7cc013282b1686520790627cdd73ef055ac85 SHA512 33bd306019d37f3eb05922805e7035bf82bd40c21934c541bd6c56522afc1aa2ebfa900024d72cd0555e290560de07b1adadb98673100b934f53779c2e40376f WHIRLPOOL 784ceac92dadc36769d6746d42c102310a72a229119206782b69541895f70c99c9f85c430be00aeda48269fbed20eb9202e0415fa3f551b40d941055c53b80bb
-EBUILD bowtie-2.2.6.ebuild 1230 SHA256 e00208c9d6b2e9190640ac98b96429984334bdbfd6bda6036426878da795858c SHA512 7c1546de18fa549defa619877688e38b2e90a5875ac9d6ca2728ae7788e495870efbbafeaabe0e3a79788e393e8d273b715fd9bcfef4267ac5daba1dd18a87ff WHIRLPOOL 512fb85c0e2326670f483881d3a32d5555c52b102e18988cd50e6b6cf9c6163692722f831ae57791f1591926bdea8786255f67903fd76d42eea6ffa3a818cd79
-EBUILD bowtie-2.2.9.ebuild 1277 SHA256 b888cb7026e045655a320d82d7118f9c137b2d980b9970df864454300a95389c SHA512 40e22698d5df241b8b98c601f8ed22276d39f4c9818bb23afec0a39b625fd38a0fdb3f4b4d6f8c01b458e2b6b3464a7ee8a135bd446f3488354eeca9934daa85 WHIRLPOOL 46434a6389e85ebdcbf550d36f7713bb2cd78da126973e4bbe2937e12837aded7be64a6cda01ddd5a834318f1c756b79953dd46c311c89c2050ecd03f48a231e
-MISC ChangeLog 6732 SHA256 22371eb1d636f1f6149d2c0d3e22dc9756d640064066244e2c85a165813a40fe SHA512 75421973bc4d23cfcaa180ed68450d9b89b373a7aa7f9c37a5de7b8cf3a47dd52bd1a351d4018e503aba38346cc73f2892befb1390fc080c2d22e39e14c55b22 WHIRLPOOL 527c69ccb02fe08f8913e07d50f95185ef79ba0c8690018bab4db9fae7aa7dcbf8214a8492f22febe3a22042b23ca0807b8485a6c93fdd88db4ad267739e3d29
-MISC ChangeLog-2015 2855 SHA256 dacfc3ea38c770f70cc02d3a2a62f704b0d77ae35ec787ce53c2ddcd133a149a SHA512 61687de55717462065994d9062d9bc822b6017e85260ee68c7844794f1a0468f10aa1c46e5a89345df316943d1cff775a71469ba182989130abce86e438af712 WHIRLPOOL bdd1b06d50f740264b1eb7d447c9909a336ff8332e971f45b5d71fae1da27cf43cdec6e97506d2d51f06f93bed4ccb6d24c978c4410669b4681626f96808df7a
-MISC metadata.xml 528 SHA256 ab2d080e80f57ea474804febc8bda7d480d0e18512e1429c6c762d72697ce860 SHA512 1eb83cbd7d7e747bc94021051ba6ae0bf22411091287b754851a9f6824b263b6ca83c9a0d055c0b6ab24963ceea9b32d76bf1b343f48a3ee4bd322fec539b301 WHIRLPOOL 32a4afad7cafe525f0da2c13cc632be5b061863562a7591291699d5d49b45aa831a15ca721e998fcc69acd1107a92495a38fc8826cf73af0ed83b85f52efdadd
+EBUILD bowtie-1.1.2-r1.ebuild 1643 BLAKE2B 81f79b8b8d9b9a56061bf92df193a21e2db03bdacb6290020e8fb2426e3e1cf9e5a6a802cb6fa5f5f68be8d7f92f749e14c0c3528ebad5825d3927bcf33ca483 SHA512 8b5c22f29aafb5977313ea002fcd654ac991015f7808f02f8e02c2105dd9a6fa77b5f5342e82d38b07674c93dbe397333be78f6d1ca9a24a60531d6a40efe382
+EBUILD bowtie-1.1.2.ebuild 1058 BLAKE2B 4aae2773c629826866242b9c62f08e904d70f55b5094b46f727ae59d0fe75845ad3c809cde724753f0ada493294340e59a2290960f6049f3795d4352b9ca4a6a SHA512 33bd306019d37f3eb05922805e7035bf82bd40c21934c541bd6c56522afc1aa2ebfa900024d72cd0555e290560de07b1adadb98673100b934f53779c2e40376f
+EBUILD bowtie-2.2.6.ebuild 1230 BLAKE2B 0382c42265c5fd5192d8d177f91f803fd4f9b28f107bcffed14573386c283d59e77d6ca72872f1c86c5f8a79f05263257865a39cfac64a8d4d6c77acb2aa299b SHA512 7c1546de18fa549defa619877688e38b2e90a5875ac9d6ca2728ae7788e495870efbbafeaabe0e3a79788e393e8d273b715fd9bcfef4267ac5daba1dd18a87ff
+EBUILD bowtie-2.2.9.ebuild 1277 BLAKE2B b9cf9edc34af3f01eb1cde1510637bbcbaf7206d9a24135d859d14dcefe793abd0b78dd19dbcd1835840514e754061aee86a79d5992ca68d316c64c98bb4891c SHA512 40e22698d5df241b8b98c601f8ed22276d39f4c9818bb23afec0a39b625fd38a0fdb3f4b4d6f8c01b458e2b6b3464a7ee8a135bd446f3488354eeca9934daa85
+MISC metadata.xml 528 BLAKE2B 310fb406a0dbe56b194ae13cf521264e105f9d849b09e10d5d7e556c7d00a9cc7a0f9546a91e43f30344c9ec14a76e0d8a3f037fb4cb91bba68999d9f45b69e0 SHA512 1eb83cbd7d7e747bc94021051ba6ae0bf22411091287b754851a9f6824b263b6ca83c9a0d055c0b6ab24963ceea9b32d76bf1b343f48a3ee4bd322fec539b301