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authorV3n3RiX <venerix@redcorelinux.org>2020-08-25 10:45:55 +0100
committerV3n3RiX <venerix@redcorelinux.org>2020-08-25 10:45:55 +0100
commit3cf7c3ef441822c889356fd1812ebf2944a59851 (patch)
treec513fe68548b40365c1c2ebfe35c58ad431cdd77 /sci-biology/blat
parent05b8b0e0af1d72e51a3ee61522941bf7605cd01c (diff)
gentoo resync : 25.08.2020
Diffstat (limited to 'sci-biology/blat')
-rw-r--r--sci-biology/blat/Manifest3
-rw-r--r--sci-biology/blat/blat-34-r2.ebuild7
-rw-r--r--sci-biology/blat/files/blat-34-fno-common.patch11
3 files changed, 18 insertions, 3 deletions
diff --git a/sci-biology/blat/Manifest b/sci-biology/blat/Manifest
index 7a4e2f33be3e..b4ae775226b6 100644
--- a/sci-biology/blat/Manifest
+++ b/sci-biology/blat/Manifest
@@ -1,4 +1,5 @@
AUX blat-34-fix-build-system.patch 5249 BLAKE2B d32fcb326cd204c847a678cabd3fc666ed9285876ec4a3f3dc1873b9b8c83042eb705cf62e63d00b6f388540571d4ebadc497eef51827a30443d3a2aebed9420 SHA512 1c4b592ef1b45ea19d84a798f4d526c43851bf8545d4a9aaaa8842c76eff1e0e31a179d1cd914e44f67c1d5ac709b97a73a5b7e66fa680f6531efe50b6dc6246
+AUX blat-34-fno-common.patch 466 BLAKE2B 51dd1778f09e51ce1e345ae9474d3aaeb8535b739bc6d46e5d9271204b7043e1c5da0865ed3392b62d85b75c4d6c6611015042d359a113a9b0540c9ae1f6e448 SHA512 fa0b327f212137afa41d8d21717b02c77cf7e8228fe6b104af4a9a430fb0ed11a49be1ae38e8b51016ed5b6c43073c6cbbf27cd8b6f8396d39e623039d700abf
DIST blatSrc34.zip 2142975 BLAKE2B 88a2da3b1551d5d50aaa507978c17cbe34de5a27efee9405829aea51b0950b748775f21e8d806470ba5ee7831fe71d6d87cd126c38727f25306a0f793543912e SHA512 67a1dc9a93d8ddee0fca7ce94096ecfffc71d4e0697afb285f4b64205e9eb62150a145375c29dd1ccb3cea8e8a7a71a817c8e73d7aba3e97616f1606b751afe8
-EBUILD blat-34-r2.ebuild 807 BLAKE2B 03979dd5b1b320c8560a8d9a50c6484fc052fadfd5e7d4cb80f3ac7a769f99b3da20fb42192087cd5652d947385de32ec9649c4d33b6f2c0430bfb5b14e9ce63 SHA512 451b189b505331cd7c045fc19982d55d11673afdfa8f0f9bd2b57cd23097c5a066afe477d973a0f30e1a47a8d1893abc552ef8ccc5f59ce9f3a66e0ceedc94b2
+EBUILD blat-34-r2.ebuild 841 BLAKE2B b85ced6d272519445d60bb5846a6fa135a214aaa4b5ffed12f77b5beef8be5f3f48ffe0e4835ecc8cbf937f233c0d18a15a7168149d31fb5d2eea508ac915431 SHA512 3b34227db3d38640ba5affe00c43c0512091e007dc21625310c169e9f44a412d47039160d952c873c0afb6f5b062e1186ea5eaacf71086093807b3169ba7b956
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/blat/blat-34-r2.ebuild b/sci-biology/blat/blat-34-r2.ebuild
index e10bc367a311..b07246356381 100644
--- a/sci-biology/blat/blat-34-r2.ebuild
+++ b/sci-biology/blat/blat-34-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -21,7 +21,10 @@ DEPEND="app-arch/unzip"
S=${WORKDIR}/${MY_PN}
-PATCHES=( "${FILESDIR}"/${PN}-34-fix-build-system.patch )
+PATCHES=(
+ "${FILESDIR}"/${PN}-34-fix-build-system.patch
+ "${FILESDIR}"/${PN}-34-fno-common.patch
+)
src_compile() {
tc-export AR CC
diff --git a/sci-biology/blat/files/blat-34-fno-common.patch b/sci-biology/blat/files/blat-34-fno-common.patch
new file mode 100644
index 000000000000..63a49cf81299
--- /dev/null
+++ b/sci-biology/blat/files/blat-34-fno-common.patch
@@ -0,0 +1,11 @@
+--- a/inc/htmshell.h
++++ b/inc/htmshell.h
+@@ -85,7 +85,7 @@ void htmlBadVar(char *varName);
+ void htmlImage(char *fileName, int width, int height);
+ /* Display centered image file. */
+
+-jmp_buf htmlRecover; /* Error recovery jump. Exposed for cart's use. */
++extern jmp_buf htmlRecover; /* Error recovery jump. Exposed for cart's use. */
+
+ void htmlVaWarn(char *format, va_list args);
+ /* Write an error message. (Generally you just call warn() or errAbort().