reinit the tree, so we can have metadata

4 files changed, 98 insertions, 0 deletions

diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
new file mode 100644
index 000000000000..af2014cefcc3
--- /dev/null
+++ b/sci-biology/bioperl-run/Manifest
@@ -0,0 +1,6 @@
+DIST BioPerl-Run-1.006900.tar.gz 14546677 SHA256 6eddca8aae38a139caaa0b28505e2ff3e919e8ed39b7539a662b0145f1f08d96 SHA512 47f2b853885c604291ac0aba3269b897de59cf7da6f7d54a50ff950cca836338091309df550f32695159c620be23391306d0421d2bbc22eebbb61a9e280ad83c WHIRLPOOL a671180b3680d94683e771ba661e0f86430814200efcd8df1552dbc3c30228d90ea8be1b47cc36603cbfc6eadacb276414ae6d79e30ec80495fd836eb1732cca
+EBUILD bioperl-run-1.6.9.ebuild 931 SHA256 216193a88c247f5a94a8a1fbddf5c84142394e05db0c696528f3704de1ed15b8 SHA512 b512b3fc62208ab6ef1c6f160d43c5e9b8a3f03131398144ec4e4e1ddb1973f45b121220e71724a0c621ff58ea33b5f639cd23dedd62e033f3e78118dde2e94e WHIRLPOOL 59e5583d20d1305d680e7bf99beac19155bb9ea4cd87f5227c616a95f91feb36062a9994073d961e10befdde1157238f8c4689a1a3b25a308337d76936119538
+EBUILD bioperl-run-9999-r1.ebuild 928 SHA256 3dddc8db1c7d8a40ba5de894447187f28bf678fec04362a6a2506b900a688b80 SHA512 42449a6ab99ccd3779899536eb525b6bf029fe477d65e5d8c66958b5803749180c06d068fdc4c06c3de0bbb9987751f6b5886ee446fdec92db5683f8e41a8e4d WHIRLPOOL 6b9b5e13a2af762a7a8c29f02c2ec6c81caeeda4b72265153124d37b9e189121175c0f8d1f4ac459c370a946ff5e8ef63fb7432433617c16c9f78652bdb161f5
+MISC ChangeLog 2714 SHA256 a8deb18bf7045efe57adde6efaa255ea359d1bbe7d7a3b61390723673706d4d8 SHA512 3180ce2c1971714fac7483346234d68c0b54833cb51267abea8072a0ce9afb93758ae2a6cfc8c9e8ba6323b2c0a1f78825ca43ba199847053317bc30d1b585b0 WHIRLPOOL 416604ad2e83fd017fd897bd0a93ae0b08f2893fe6db04bcef34d3e6647c47eeb68bdff7947586e707a49a2fff5e0e20a416fbb666c1df9b96d1aa7c2b0dfc77
+MISC ChangeLog-2015 4922 SHA256 894c5d73973fd308ef87e47c9ec9200d4fa6e69cbaa48add3ec1bbc0da5ac61e SHA512 3810afc32235725f917639aee6a21ad83521d32787efa453d54098c89fac36d04f7573bb8c93d3fd7f02db897382417e17a14cfe3ffa865b6d88d41c7a99dd03 WHIRLPOOL 143823eb2873eaa24a283bfda5a347ada22f018e1a87308a8fc3e502d1b4a929b7d1d0a61d7f9fb705850fec35b1ab6f108c23a2dbfe1f23b936473eef3c11d2
+MISC metadata.xml 345 SHA256 925b0030884af3b8c4a9cb3a539154ca27318dc788b9e1f3d51f0b1511ac9427 SHA512 23370e5fb887d48f37f6ef1d3fa45092fb3b45e111f82488153ce5235bdd7671bed559093927ad92e3c7876f390e385d032fbf9e76a55cb00a0da7fa80bea2ad WHIRLPOOL 9c0136ff7780364d07d2aa08f249cdb07f3723e65dbc957251dbeaaa3c5cc178fbb0712ccbb31e021de12c92b051766a86429781fa7d3c55ea0ecbb3b7c8d46d
diff --git a/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
new file mode 100644
index 000000000000..e5dc816bc78a
--- /dev/null
+++ b/sci-biology/bioperl-run/bioperl-run-1.6.9.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="5"
+
+BIOPERL_RELEASE=1.6.9
+
+MY_PN=BioPerl-Run
+MODULE_AUTHOR=CJFIELDS
+MODULE_VERSION=1.006900
+inherit perl-module
+
+DESCRIPTION="Perl wrapper modules for key bioinformatics applications"
+HOMEPAGE="http://www.bioperl.org/"
+
+SLOT="0"
+KEYWORDS="amd64 x86"
+IUSE="-minimal test"
+#SRC_TEST="do"
+
+RESTRICT="test"
+
+CDEPEND=">=sci-biology/bioperl-${BIOPERL_RELEASE}
+	!minimal? (
+		dev-perl/Algorithm-Diff
+		dev-perl/XML-Twig
+		dev-perl/IO-String
+		dev-perl/IPC-Run
+		dev-perl/File-Sort
+	)"
+DEPEND="dev-perl/Module-Build
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+	# TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file)
+	# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
+	#find "${D}" -name '*ConfigData*' -print -delete
+}
diff --git a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
new file mode 100644
index 000000000000..2052432904af
--- /dev/null
+++ b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="5"
+
+inherit perl-module git-2
+
+DESCRIPTION="Perl wrapper modules for key bioinformatics applications"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/bioperl/${PN}.git"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE="-minimal test"
+#SRC_TEST="do"
+
+RESTRICT="test"
+
+CDEPEND=">=sci-biology/bioperl-${PV}
+	!minimal? (
+		dev-perl/Algorithm-Diff
+		dev-perl/XML-Twig
+		dev-perl/IO-String
+		dev-perl/IPC-Run
+	)"
+DEPEND="dev-perl/Module-Build
+	${CDEPEND}"
+RDEPEND="${CDEPEND}"
+
+S="${WORKDIR}/BioPerl-run-${PV}"
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+	# TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file)
+	# with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D
+	find "${D}" -name '*ConfigData*' -print -delete
+}
diff --git a/sci-biology/bioperl-run/metadata.xml b/sci-biology/bioperl-run/metadata.xml
new file mode 100644
index 000000000000..5fccf50862ad
--- /dev/null
+++ b/sci-biology/bioperl-run/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="cpan">BioPerl-Run</remote-id>
+  </upstream>
+</pkgmetadata>