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authorV3n3RiX <venerix@koprulu.sector>2022-07-09 15:43:36 +0100
committerV3n3RiX <venerix@koprulu.sector>2022-07-09 15:43:36 +0100
commit2719f73b6813d11d13a9650cdd2ab8ec6e69385d (patch)
tree8c816148bcbd22757d892089c989ae614eae4f5a /sci-biology/bioperl-db
parent0f558761aa2dee1017b4751e4017205e015a9560 (diff)
gentoo resync : 09.07.2022
Diffstat (limited to 'sci-biology/bioperl-db')
-rw-r--r--sci-biology/bioperl-db/Manifest2
-rw-r--r--sci-biology/bioperl-db/bioperl-db-1.6.9-r2.ebuild (renamed from sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild)30
2 files changed, 18 insertions, 14 deletions
diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest
index 4a69d8ed75c3..c9a9fdd4e8f8 100644
--- a/sci-biology/bioperl-db/Manifest
+++ b/sci-biology/bioperl-db/Manifest
@@ -1,4 +1,4 @@
AUX bioperl-db-1.6.9-db.patch 1567 BLAKE2B 40a1ba874e745630d886d0531ab90385bb2207073bebc823c52f595fa4752b0b9bf310adf7148ba4c7c5c1ec19ddec226d28a34311c932a0f37da6af1c0dd422 SHA512 a0a2ca951645b70b2e4eb3390598b2a42d6631109500238d6fc482d97a616ec1881738e5dc9af118d37fdf50657916ff275124f409510cf15515dfbc829766c0
DIST BioPerl-DB-1.006900.tar.gz 492799 BLAKE2B fb923533ecdb74e868a3aef0c0c6ba8da419ae3c0e9d2e8c55297aad15563b135b6b00fd158481b31dcacd1125f7e10a557052bd4b04eed3a400c972653ff757 SHA512 e06b8b9aa4188a83128f910d7b4a031f69d36f75e4f2d7210357366379024ef39b58eca97112b5b419f141c82b7518086273cc97c9637382ee5e0ddb9ce28746
-EBUILD bioperl-db-1.6.9-r1.ebuild 2337 BLAKE2B 1280789bf53691480419a2cac16eebef3dcce19e98b4216660fba58c582c82b30848f01e47e9adf85a5a1288e0da0114ae12eec29ef05fc680f9ffb3188703e1 SHA512 c954983c93fdd76aa5faa600c1d855d7f4e98da88adc63d93a7d6e7c795a14ab75bc073ae6452570d6042f8dca1927b8dc6b23554fb86be367b2368556631e36
+EBUILD bioperl-db-1.6.9-r2.ebuild 2351 BLAKE2B 338fef5e883902619f1c369fa2ca450711aefe5ac49d16e210242703fe665ee0e7ed9b13e50f02a1d7e866b39bc954f6e163f549f5d4966ee389c320ee550047 SHA512 b481726e1b72f3874449b3a97f9309839658f825ecf39eff4f2f019efa62f696b73e878aceec99fc4e434446f8a92cb4e9267d82f631b301ab4c399fcecf2b08
MISC metadata.xml 345 BLAKE2B 3bc3614e7030d42358f8c616b364d20788507eb62fdb72b9c581bf6ae7629bd1d258a8ff97de8e09e28e83217d88cecb53744c1d36892da04ec264db93287d12 SHA512 e543c3388ae8594a533eb55919e4cff9fbcefef82b043c151c9c1d0732918803a2811c0c3352684483fa0e5494f6559f864a9d453300c790fb4cafc765a418d5
diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.9-r2.ebuild
index b36c22532f35..6359865b90e0 100644
--- a/sci-biology/bioperl-db/bioperl-db-1.6.9-r1.ebuild
+++ b/sci-biology/bioperl-db/bioperl-db-1.6.9-r2.ebuild
@@ -1,13 +1,14 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=8
BIOPERL_RELEASE=1.6.9
DIST_NAME=BioPerl-DB
DIST_AUTHOR=CJFIELDS
DIST_VERSION=1.006900
+DIST_TEST="do" # Parallelism probably bad
inherit perl-module
DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
@@ -15,34 +16,32 @@ HOMEPAGE="http://www.bioperl.org/"
SLOT="0"
KEYWORDS="amd64 x86"
-RESTRICT="test"
IUSE="test"
+RESTRICT="test"
-DIST_TEST="do" # Parallelism probably bad
-PATCHES=( "${FILESDIR}/${PN}-1.6.9-db.patch" )
RDEPEND="
>=sci-biology/bioperl-${PV}
dev-perl/DBD-mysql
dev-perl/DBI
sci-biology/biosql"
-DEPEND="${RDEPEND}
- dev-perl/Module-Build
+DEPEND="
+ ${RDEPEND}
test? (
dev-perl/Data-Stag
dev-perl/Sub-Uplevel
dev-perl/Test-Warn
dev-perl/Test-Exception
virtual/perl-Test-Simple
- )
-"
+ )"
+BDEPEND="dev-perl/Module-Build"
+
+PATCHES=( "${FILESDIR}"/${PN}-1.6.9-db.patch )
+
src_prepare() {
export GENTOO_DB_HOSTNAME=localhost
perl-module_src_prepare
}
-src_install() {
- mydoc="AUTHORS BUGS FAQ"
- perl-module_src_install
-}
+
src_test() {
einfo "Removing bundled test libraries t/lib"
rm -r "${S}/t/lib" || die "Cannot remove t/lib"
@@ -97,3 +96,8 @@ src_test() {
pkill -F "${pidfile}"
eend $?
}
+
+src_install() {
+ mydoc="AUTHORS BUGS FAQ"
+ perl-module_src_install
+}