reinit the tree, so we can have metadata

3 files changed, 57 insertions, 0 deletions

diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest
new file mode 100644
index 000000000000..ae8b11de2851
--- /dev/null
+++ b/sci-biology/bfast/Manifest
@@ -0,0 +1,5 @@
+DIST bfast-0.7.0a.tar.gz 2456617 SHA256 ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e SHA512 16e7ec5101c478f0dfc171016cbacb2b9240773e43b2d40eeb42d0e47afcee50a6dd5838e043a0326fc1ca9a87d3e55b42326a7f17b7c5654ef9825913860836 WHIRLPOOL f9098c00a2f328fd5116447aae86f0aed078f6c2e6a49a4459e09f0c2a2023e0d60be1893fc2337b85444c24efb2636953517eda2ced336d1bc6dc8d94706e6b
+EBUILD bfast-0.7.0a.ebuild 878 SHA256 ec3a4a2eb673c05e4cbb0fff60357484ab8299d29a0bf0618a096377c1e70877 SHA512 1250f77e618c3164126e584cb85efec65afb4a8884ea30c8b4418ee812907824945bbc945893e48eb45c21ee3b082efb235616c891507c3494e81341c804693c WHIRLPOOL 446f781c13823263183403d9bb54df384f36523cc77d748287ff473ee03ce442b79354d098c960d63fdbcff904840892633f9c9ee972dbae1f94e68de1feb190
+MISC ChangeLog 2656 SHA256 763af98b24b15cd0cdbdbbd55fc573d40d0857557e5e8be7e318bb7769c24d87 SHA512 b3f402df9dc4e3c17b1a9176febbb511214535e96eac8e7805193728a253e2026d394eb807a25985166f94e618f024533eea7d12dae5d889be032cecfa613e28 WHIRLPOOL 613b72c5454e16ab0e387508856c7790378e34d0707ef709c18665388dc28dec5f36cbf74b60e61ca3e374c11f81d989b40a1b94a78cdbf61328fd174b12b02f
+MISC ChangeLog-2015 1764 SHA256 300764a645e32c9b02d739f44ad8a482ef89543de3bbc1bacfe827822d8aceba SHA512 e188df2ab81e95fe0b3425936f96bb73625ead148decfd16ca955df1fe43b94365339a3ae607e23fe7d60ef018e1a78967537311ec3cd17498693107fb5752ba WHIRLPOOL ae559877d836e911e6aa0b95af235abb599312f34f2deedaa1aea06885051baa9e00f8835f0d60d4e35ded79e8aac5d80016363758f01dc4aff8295f47603ddb
+MISC metadata.xml 346 SHA256 53f376fe43dce55bbb50f5d9b543b66d51b383d98f74c83176b04ac19211a129 SHA512 b402eeeb37be04022693af8692b128bb257a69b8eeb75170506352fe05fa6e7154c908267bbab7af7d38d1eee26ad6d98e6be5f9c8647181aa491b3fb1680b62 WHIRLPOOL 5029d7380a2199fee9bd014d1ea94f791290c1a422b4cbcb84c24e54e0db1a00c8846c2f6f1e119e8b4ad1d74599c1131441abd6ed200e6ce36afb2225f417c4
diff --git a/sci-biology/bfast/bfast-0.7.0a.ebuild b/sci-biology/bfast/bfast-0.7.0a.ebuild
new file mode 100644
index 000000000000..33fc6b8ef8b0
--- /dev/null
+++ b/sci-biology/bfast/bfast-0.7.0a.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils flag-o-matic
+
+DESCRIPTION="Blat-like Fast Accurate Search Tool"
+HOMEPAGE="https://sourceforge.net/projects/bfast/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="test"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="dev-perl/XML-Simple"
+
+src_prepare() {
+	sed \
+		-e 's/-m64//' \
+		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
+		-e 's:-g -O2::g' \
+		-i configure.ac || die
+	sed \
+		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
+		-i tests/*sh || die
+
+	sed \
+		-e '/docdir/d' \
+		-i Makefile.am || die
+
+	use test && AUTOTOOLS_IN_SOURCE_BUILD=1
+
+	append-flags -fgnu89-inline
+
+	autotools-utils_src_prepare
+}
diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml
new file mode 100644
index 000000000000..933dea84e1b3
--- /dev/null
+++ b/sci-biology/bfast/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">bfast</remote-id>
+  </upstream>
+</pkgmetadata>