diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
| commit | 2719f73b6813d11d13a9650cdd2ab8ec6e69385d (patch) | |
| tree | 8c816148bcbd22757d892089c989ae614eae4f5a /sci-biology/bedtools | |
| parent | 0f558761aa2dee1017b4751e4017205e015a9560 (diff) | |
gentoo resync : 09.07.2022
Diffstat (limited to 'sci-biology/bedtools')
| -rw-r--r-- | sci-biology/bedtools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/bedtools/bedtools-2.30.0.ebuild | 11 |
2 files changed, 6 insertions, 7 deletions
diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest index c806da84e07a..94d013ad869a 100644 --- a/sci-biology/bedtools/Manifest +++ b/sci-biology/bedtools/Manifest @@ -1,5 +1,5 @@ AUX bedtools-2.29.2-buildsystem.patch 2002 BLAKE2B 7925c788858515ec4454ece3823680e99053790aeb30b2dcab06a52f6827c3cca85543c899fbabcc75ac5872cdfe632c9c5bf8b5dc24146c50a00dbd4ea56a1d SHA512 a76ec350aedfce4926f8fbaed742a992f81b2280727383f7aefd7f3629f7e04f300f9d3d9cce2a98c6fe2767cb6d2261074bd6242d6d5ae26a5095730c054a85 AUX bedtools-2.29.2-python.patch 1235 BLAKE2B 34381a33be915f983b2c93f04954486e7611f56b1bc3259887e5ac3aa54107e3392a784980779948136f97424485a31a53959f2f76b573cb44b7d83023c69005 SHA512 8c22230e3bc1eaeb7d85379eab402eb1e95443f88f60a9c04f628cd38a96b91d138149a1a46d941189a8cd6097e075a8bde8d4ad883757ec7b2c129268cdb37f DIST bedtools-2.30.0.tar.gz 20648577 BLAKE2B 042bc31e846455cb1c20199f7a27a3850851f7c256a45b1e674c7aa48ecedc211b0fdfc5e25f915b588f21447e757ebff2bba16a65905bb10d3c88e4b17b1db1 SHA512 3993243cc3db12d194d6220aeae200e6af843d6d32d4e5a9a82d04c9d119f8ed47e618e87241edfa82cfac081bc9a40ada18f097d21b0cafc5f912ae012701c9 -EBUILD bedtools-2.30.0.ebuild 1184 BLAKE2B 128c85d2fae5a45068f3c6f0c64b93902dcfaf0eb1464fbc8546ac7b62827d62fbd01cab422e23153cc9e2975f3d43f628305a3986caf6df36923059f45d6a6c SHA512 77c36f5abcf230a4eff2f7215998ed8188d0e6dda8c1c1de94c16e6dd3b7b480bb6abed0d6bcf0baec2ebbb1d678c51a0c1b16aebc34785e49245e5d30b0626a +EBUILD bedtools-2.30.0.ebuild 1187 BLAKE2B c24ffd5edda4c21dae3640accbf5010105486186f7a6789adfef5f2c0c21234d9e85bb2954feeb01a1b519ad7936a19893f391a6fcf738bfb6cda68ce82bdcfa SHA512 c7038e7139e2ba4e9f39dbd7d606b7de95c105044b6d0307c3560010c9129f91137055dd63e5b29c590405ac384adb805cfcc2d20ed7aa3872c6fab128df4a53 MISC metadata.xml 407 BLAKE2B f3c2890ef1648dcfc7ae92c56fec8c111de2cb82ba4c8f7402756fa9db6f2ee43fa3ccb9a75db5d1e2ca7893ed3041efc22452814944e0e56f1a589353b47774 SHA512 925406053fd5c1aecb5ef26c522b3f410c6f9a639dc1ab7790a4124513c870af5b818adc53875c93ab19a36d444b8fb23c5ef10cc11ed50080785bbe60d1eb98 diff --git a/sci-biology/bedtools/bedtools-2.30.0.ebuild b/sci-biology/bedtools/bedtools-2.30.0.ebuild index 3647f43dabe5..3e0d51b0711b 100644 --- a/sci-biology/bedtools/bedtools-2.30.0.ebuild +++ b/sci-biology/bedtools/bedtools-2.30.0.ebuild @@ -1,15 +1,16 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..11} ) inherit python-any-r1 toolchain-funcs DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats" HOMEPAGE="https://bedtools.readthedocs.io/" SRC_URI="https://github.com/arq5x/${PN}2/releases/download/v${PV}/${P}.tar.gz" +S="${WORKDIR}/${PN}2" LICENSE="GPL-2" SLOT="0" @@ -26,8 +27,6 @@ BDEPEND=" ${PYTHON_DEPS} test? ( >=sci-biology/samtools-1.10:0 )" -S="${WORKDIR}"/${PN}2 - # bedtools2 has a *terrible* build system and development practices. # Upstream has forked htslib 1.9 and extended it by adding clever callbacks # that make unbundling it nigh impossible. There are no signs of upstream porting @@ -44,6 +43,6 @@ src_configure() { src_install() { default - insinto /usr/share/${PN} + insinto /usr/share/bedtools doins -r genomes } |