diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-02-10 21:05:55 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-02-10 21:05:55 +0000 |
| commit | 71deace00d1a2b091313fe137ab7092418c6f87c (patch) | |
| tree | 9f1f0dee23e13658e52f49437befe78427148c51 /sci-biology/bcftools | |
| parent | 29aabba0ea759c6a2864ff5631735b67ee38e5e0 (diff) | |
gentoo resync : 10.02.2020
Diffstat (limited to 'sci-biology/bcftools')
| -rw-r--r-- | sci-biology/bcftools/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.9-r2.ebuild (renamed from sci-biology/bcftools/bcftools-1.9.ebuild) | 10 | ||||
| -rw-r--r-- | sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch | 10 |
3 files changed, 18 insertions, 5 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 2c0602a79c08..09afec5ba291 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,8 +1,9 @@ AUX bcftools-1.5-buildsystem.patch 376 BLAKE2B 384bf91c3af4f98c76c0ab6fecdfe0ec9483b77c54517df0ad2703441def7a7a6982ee792ae1775414ab8cec43d0e65ff6d2187be7cb85bb42eb5af8f9b7283e SHA512 c8ede2be5205ab287843662e7b97ecae8d4fc7d2aaf09e0b9fa67f5a3168149b15457e73c2c9d8b74fcfada08ec5c1bbe61013a2ef434ee50acf56eccabf6723 AUX bcftools-1.5-fix-shebangs.patch 594 BLAKE2B 28d0a58627dcc1b1eb8f546c73a88f76e3277c82772f8a7af814d9ff3bcb116751b065166661c486e8c6b1708a54de227a5ef65d18a8527b38f5119d744539d2 SHA512 e00cc0de35ad5866f7321408a7995f054f80e37e642b6c3097c5e786635dc61baefa7ea8847f2222d32196825e3e44209d63fdfd219c54b09421a4bb310067f5 +AUX bcftools-1.9-buildsystem.patch 380 BLAKE2B b71567ad14d96b85bf449db473b38cd9ff2a32420d9c4d1b606cad0e09a478fd0946b589c62405aceacf234db7abde3fcf180eed7fbf0d8db73565b4424f86b8 SHA512 f0124734e6309eda73e5f32a9832e8c35de1929c6503627564346f097415bc76294371eda1886100ce2f1ed8e0de695e978a720dd4517e8411dcd041797af2b5 AUX bcftools-1.9-fix-shebangs.patch 198 BLAKE2B 9d6c365c7193c7815216be4f8034c00e0048f7352e15ee24b4359828bf0906755ab9524fb10ad185754652b74007dc2c756b2260f64a263f696cf0f737ff25d7 SHA512 65eecc5e0d5cf3df1538b078c7606b38451e13f4f359ecf9287a9e03721c7c7ba1cd8bd517a98dd34842db22624fbdc570e9707d13f2e2fb82b16b3ca41ca71e DIST bcftools-1.5.tar.bz2 2975685 BLAKE2B 937b7db770dcaddafbd00b67c3b88501a3190564b2ca629b83e52b48b414a604dd203cd067e357e2b7d02c700387576fca458d1cab2982dafa3b2c215b528722 SHA512 66b8bc61b9fbb381679a6781f77a18f66e8105567992da011413bc573d99b619558a1cf58e9e1373ae347a8b81638dd91977802a07a4578ddc9c61fb53403233 DIST bcftools-1.9.tar.bz2 3134355 BLAKE2B dd551b509b1ee554f70be9da28a6eaf81dfcec43fc0d1aa972d64ef846f9db47f39177345e8c1ca754d11defb9c0823976ae94d6b3e7cd99313eed4f381182ed SHA512 fd662fb0d214eb75ac04fc4494e8dbaca84d10698ca14801427341def6a5df4af99e7bd4cd873da5422ae921deb49b940cedb926da356b1eabfac525a38f806c EBUILD bcftools-1.5.ebuild 868 BLAKE2B acfd6758e27cb9ade023d91074724affd0fa3016af565c809819fae615be61ca8af90edf6b38eaf0a4ed5f3e9eaaa19451096b8d7c27a58c6ed0540bf7260784 SHA512 e0aacba5fc54cbf7a8d64db84e52f28baf8df36fa01c63fc167998c6ec5ef65a040c0725f445970f32888ae947b89d50d92dc2fc704fdf63a8a900762ec367e6 -EBUILD bcftools-1.9.ebuild 927 BLAKE2B 3e9c712316fa510ddc7be30c398565e3fa4e435fe58cf4263ba3c69dca34b4c227fc80ea23c52e70437a3b9058645f02505a17831c04a23e97086175ed8ee383 SHA512 0cbb0d08596819f7769d23ade97627b6ac9362140904609a2ea0603b8285e94ea2472721a49f298e7aae9a97d3495c3816e8229620a1a11225d2fcd881504cf8 +EBUILD bcftools-1.9-r2.ebuild 996 BLAKE2B 27af6e1f88f2501f6b4c2a627a755e82024130f1e0b884a517322fa7181d18f00a1323fe0477f914d80c25aa0dc81152d930689e1e18870af69d8dbeb1daaeb8 SHA512 f9e052edd07c6cd9bafa338913954729bbcf0302d418426d3077685acc15128cd19991361a2737c8f56fca4069123d58446633e0ca7c881b3996a65f33fd7d0b MISC metadata.xml 452 BLAKE2B 53a356b0569d9db1377bc1881d58b4b354d4861eb21b2c602df59b7923b175a20623cf3369695416eb08d44fabe32036f5a5ec3119c765c8f85347d3b094918a SHA512 eb656430c9ee5ffee5ec5f9f8f3c69e8b0d1ae124cd720ae4af6c3c160da5dc261838744f75e838a85935bbc9bd5201b038ee11cb41a0e1209c9df58aa85fc1a diff --git a/sci-biology/bcftools/bcftools-1.9.ebuild b/sci-biology/bcftools/bcftools-1.9-r2.ebuild index 53e47bc01a81..eafe63a1ee54 100644 --- a/sci-biology/bcftools/bcftools-1.9.ebuild +++ b/sci-biology/bcftools/bcftools-1.9-r2.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python3_6 ) inherit python-single-r1 @@ -14,18 +14,20 @@ SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl + $(python_gen_cond_dep ' + dev-python/matplotlib[${PYTHON_MULTI_USEDEP}] + ') =sci-libs/htslib-${PV}*:= sys-libs/zlib:= ${PYTHON_DEPS}" DEPEND="${RDEPEND}" PATCHES=( - "${FILESDIR}"/${PN}-1.5-buildsystem.patch + "${FILESDIR}"/${PN}-1.9-buildsystem.patch "${FILESDIR}"/${PN}-1.9-fix-shebangs.patch ) diff --git a/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch b/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch new file mode 100644 index 000000000000..a0df4b917bcb --- /dev/null +++ b/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch @@ -0,0 +1,10 @@ +--- a/Makefile ++++ b/Makefile +@@ -282,7 +282,6 @@ + $(INSTALL_PROGRAM) $(PROGRAMS) $(DESTDIR)$(bindir) + $(INSTALL_SCRIPT) $(MISC_SCRIPTS) $(DESTDIR)$(misc_bindir) + $(INSTALL_MAN) doc/bcftools.1 $(DESTDIR)$(man1dir) +- $(INSTALL_PROGRAM) plugins/*.so $(DESTDIR)$(plugindir) + + clean: testclean clean-plugins + -rm -f gmon.out *.o *~ $(PROGRAMS) version.h plugins/*.so plugins/*.P |