diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-11-16 16:56:41 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-11-16 16:56:41 +0000 |
| commit | 38f60b3ec9ff175535d9a056a76ae42931e61e21 (patch) | |
| tree | 320bc3a66bb967560bbfe8c576a6e75333cf83cc /sci-biology/HTSeq | |
| parent | e2d84e38284aeb9d522a7e935554340ddf0e4a6f (diff) | |
gentoo resync : 16.11.2017
Diffstat (limited to 'sci-biology/HTSeq')
| -rw-r--r-- | sci-biology/HTSeq/HTSeq-0.9.1.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/HTSeq/HTSeq-9999.ebuild | 31 | ||||
| -rw-r--r-- | sci-biology/HTSeq/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/HTSeq/metadata.xml | 19 |
4 files changed, 85 insertions, 0 deletions
diff --git a/sci-biology/HTSeq/HTSeq-0.9.1.ebuild b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild new file mode 100644 index 000000000000..446bbef36efb --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-0.9.1.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild new file mode 100644 index 000000000000..446bbef36efb --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-9999.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/simon-anders/htseq.git" +else + SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND=" + ${RDEPEND} + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest new file mode 100644 index 000000000000..ea6d4df9fe10 --- /dev/null +++ b/sci-biology/HTSeq/Manifest @@ -0,0 +1,4 @@ +DIST HTSeq-0.9.1.tar.gz 596941 SHA256 af5bba775e3fb45ed4cde64c691ebef36b0bf7a86efd35c884ad0734c27ad485 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 WHIRLPOOL da3f1d867f9cfa05e34321f75fb34ef79e943476ee650d4689e320078821703721168bfdd9e46f10f1319cc1006771cd205a80569549d21719d38aea6b0be3a8 +EBUILD HTSeq-0.9.1.ebuild 715 SHA256 21b215f330c0df909001000b539028aadb79b5a25652d236e11d7f69e4674a1e SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 WHIRLPOOL 1729d114f931a0617e59f95943175b890e80cbc678fbae57e1903e8ff18bfdd47cc526bbde26594efb3558d20ce7789e8050e9f7c33df89632c553fd65ea1b47 +EBUILD HTSeq-9999.ebuild 715 SHA256 21b215f330c0df909001000b539028aadb79b5a25652d236e11d7f69e4674a1e SHA512 eee6989a6910b4022b94982f1c8f598215431c6e0674609d8f30b992a4b9036fde82156fbec0bb4fad1b6bfbd56aa33dcb05cff136cb90a7f5678f18218f3fd0 WHIRLPOOL 1729d114f931a0617e59f95943175b890e80cbc678fbae57e1903e8ff18bfdd47cc526bbde26594efb3558d20ce7789e8050e9f7c33df89632c553fd65ea1b47 +MISC metadata.xml 564 SHA256 102e5db302a66dded538eafc86b66661637591f72fcda8cffea62b12b5aa031e SHA512 16ec7f26466ba1bb2549ee5a0362a7aebb1b8b48de51bacd37bb67a20ca1ca41b0009ca5eae304c5f29e991a79a2fda7bbc93c7dd7e2c8491a0df69a97d9821f WHIRLPOOL 4824b6a5f524d4783b04a3b9cf8c83752309a1101ce4905cd49db5c474718bd88e04afe065d64d7e9276b795fe1a98c18192719acf85f99b46873134549d4782 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml new file mode 100644 index 000000000000..e9ba18c35b3c --- /dev/null +++ b/sci-biology/HTSeq/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>proxy-maint@gentoo.org</email> + <name>Proxy Maintainers</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="pypi">HTSeq</remote-id> + </upstream> +</pkgmetadata> |