gentoo auto-resync : 27:04:2024 - 23:59:42

1 files changed, 0 insertions, 66 deletions

diff --git a/sci-biology/HTSeq/HTSeq-9999.ebuild b/sci-biology/HTSeq/HTSeq-9999.ebuild
deleted file mode 100644
index b4b7974e60d0..000000000000
--- a/sci-biology/HTSeq/HTSeq-9999.ebuild
+++ /dev/null
@@ -1,66 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_IN_SOURCE_BUILD=1
-PYTHON_COMPAT=( python3_{9..11} )
-
-inherit distutils-r1 flag-o-matic
-
-DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
-HOMEPAGE="https://htseq.readthedocs.io/"
-
-if [[ ${PV} == *9999 ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/htseq/htseq.git"
-else
-	SRC_URI="https://github.com/htseq/htseq/archive/release_${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-	S="${WORKDIR}"/htseq-release_${PV}
-	KEYWORDS="~amd64"
-fi
-
-LICENSE="GPL-3+"
-SLOT="0"
-
-RDEPEND="
-	dev-python/numpy[${PYTHON_USEDEP}]
-	sci-biology/pysam[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-	test? (
-		dev-python/matplotlib[${PYTHON_USEDEP}]
-		dev-python/pandas[${PYTHON_USEDEP}]
-		dev-python/scipy[${PYTHON_USEDEP}]
-	)"
-BDEPEND="
-	>=dev-lang/swig-3.0.8
-	dev-python/cython[${PYTHON_USEDEP}]"
-
-distutils_enable_tests pytest
-
-src_configure() {
-	# mask broken asserts in src/step_vector.h:72
-	append-cppflags -DNDEBUG
-
-	distutils-r1_src_configure
-}
-
-python_test() {
-	distutils_install_for_testing
-
-	# Due to the build directories creating a competing
-	# hierarchy, we move to the test/ dir to avoid implicitly
-	# injecting the root HTSeq/ dir into the PYTHONPATH,
-	# which leads the python module lookup astray:
-	#   ${PWD}
-	#   ├── build
-	#   │   ├── lib
-	#   │   │   └── HTSeq
-	#   │   [...]
-	#   ├── HTSeq
-	#   └── test
-	cd test/ || die
-	ln -s ../example_data || die
-	epytest
-}