summaryrefslogtreecommitdiff
path: root/metadata/md5-cache/sci-biology
diff options
context:
space:
mode:
authorV3n3RiX <venerix@redcorelinux.org>2017-12-10 09:09:16 +0000
committerV3n3RiX <venerix@redcorelinux.org>2017-12-10 09:09:16 +0000
commitf45955e60d4da9b7f4a1088c98042f9c06669039 (patch)
tree25ff171e8813c8b99f79a424124ed214a9520850 /metadata/md5-cache/sci-biology
parentb9ef7cab6264f1838672efbbcb4ba3b3abd5323f (diff)
gentoo resync : 10.12.2017
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin34254 -> 34245 bytes
-rw-r--r--metadata/md5-cache/sci-biology/allpathslg-52488-r24
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.26.04
-rw-r--r--metadata/md5-cache/sci-biology/foldingathome-7.4.4-r22
-rw-r--r--metadata/md5-cache/sci-biology/goby-cpp-2.0.14
-rw-r--r--metadata/md5-cache/sci-biology/rmblast-1.2-r14
-rw-r--r--metadata/md5-cache/sci-biology/vaal-46233-r24
-rw-r--r--metadata/md5-cache/sci-biology/wise-2.4.0_alpha4
8 files changed, 13 insertions, 13 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 7dddce98b892..0213f07340e0 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
index e2045c76b171..d983d56bbb3a 100644
--- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2
+++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
@@ -7,6 +7,6 @@ KEYWORDS=~amd64
LICENSE=MIT
RDEPEND=!sci-biology/allpaths !sci-biology/vaal
SLOT=0
-SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz
+SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2
_eclasses_=autotools dc412f38566b91012efd58b9c203e6c3 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 flag-o-matic a6089a2a4027ae3da4a460dc87b21050 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af
-_md5_=89ad1ab9497c178e43302814589f5f26
+_md5_=bd338637b4cab8bfc320aeaffcb5297e
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0
index 067dc8b41041..2d228f158502 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.26.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0
@@ -8,6 +8,6 @@ KEYWORDS=~x86 ~amd64
LICENSE=GPL-2
RDEPEND=sys-libs/zlib
SLOT=0
-SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz
+SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2
_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 flag-o-matic a6089a2a4027ae3da4a460dc87b21050 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 185a06792159ca143528e7010368e8af
-_md5_=76f5a1f39ff7b393994b8a22dc4a192f
+_md5_=b98381a5354033f52d1f184025f4d3aa
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2 b/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2
index 519aa2ccffdc..acc7f7fc0b46 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2
@@ -9,5 +9,5 @@ RDEPEND=app-arch/bzip2 sys-devel/gcc sys-libs/glibc sys-libs/zlib
RESTRICT=mirror bindist strip
SLOT=0
SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 )
-_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e systemd 34815d3b76e745c5ca33eec9f95074c2 toolchain-funcs 185a06792159ca143528e7010368e8af user 8bc2845510e2109af75e3eeac607ec81 versionator c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e systemd 8f5286f89e265842f5b5189666eae88b toolchain-funcs 185a06792159ca143528e7010368e8af user 8bc2845510e2109af75e3eeac607ec81 versionator c80ccf29e90adea7c5cae94b42eb76d0
_md5_=86f961609a642ab48b8d01340679c697
diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
index bde045df5408..188e4e0b6662 100644
--- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
+++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1
@@ -8,6 +8,6 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-3
RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12
SLOT=0
-SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip
+SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip https://dev.gentoo.org/~mgorny/dist/goby-cpp-2.0.1-files.tar.bz2
_eclasses_=autotools dc412f38566b91012efd58b9c203e6c3 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af
-_md5_=416e64f4b9f8268c7d795c45e35bacf7
+_md5_=8282c100b202c470aedc98e37f6151ff
diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
index 7208abb17076..64e42f3d227d 100644
--- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1
+++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
@@ -7,6 +7,6 @@ KEYWORDS=~amd64 ~x86
LICENSE=OSL-2.1
RDEPEND=dev-libs/boost
SLOT=0
-SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz
+SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2
_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 flag-o-matic a6089a2a4027ae3da4a460dc87b21050 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af
-_md5_=7aa6de8741afab9d848f4cbada44c7ad
+_md5_=1283e94bf3a231a794a498d2769aaa7d
diff --git a/metadata/md5-cache/sci-biology/vaal-46233-r2 b/metadata/md5-cache/sci-biology/vaal-46233-r2
index cc22d030d2c1..8e81439158b7 100644
--- a/metadata/md5-cache/sci-biology/vaal-46233-r2
+++ b/metadata/md5-cache/sci-biology/vaal-46233-r2
@@ -8,6 +8,6 @@ KEYWORDS=amd64
LICENSE=Whitehead-MIT
RDEPEND=!sci-biology/allpaths !sci-biology/allpathslg
SLOT=0
-SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc
+SRC_URI=ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/vaal-46233.tar.gz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc https://dev.gentoo.org/~mgorny/dist/vaal-46233_remove-namespace-std.patch.bz2
_eclasses_=autotools dc412f38566b91012efd58b9c203e6c3 libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af
-_md5_=93fba567a04e46611159af4ccc822131
+_md5_=7ca22b906d6f7e7c4fe2f2f35eedfb6b
diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
index e4d3aca677e9..a6a55ca5ab0e 100644
--- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
+++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
@@ -8,6 +8,6 @@ KEYWORDS=~amd64 ~x86
LICENSE=BSD
RDEPEND=~sci-biology/hmmer-2.3.2
SLOT=0
-SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz
+SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2
_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 97ce9decef1ff4b6c5be700283f67343 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af versionator c80ccf29e90adea7c5cae94b42eb76d0
-_md5_=3fc50009d15dddcf126bbf0735404920
+_md5_=5089373e8fa38f080134e22ddf59264c
generated by cgit v1.2.3 (git 2.25.1) at 2024-06-29 16:54:08 +0000