gentoo resync : 16.04.2018

5 files changed, 2 insertions, 40 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 56890057fd0c..1e5d2bb4802a 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
deleted file mode 100644
index f5a53e5eb50f..000000000000
--- a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile configure install preinst prepare setup test
-DEPEND=>=virtual/jdk-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 dev-java/ant-junit4 >=dev-java/javatoolkit-0.3.0-r2
-DESCRIPTION=Bayesian MCMC of Evolution & Phylogenetics using Molecular Sequences
-EAPI=5
-HOMEPAGE=https://github.com/beast-dev/beast-mcmc
-IUSE=elibc_FreeBSD elibc_FreeBSD
-KEYWORDS=~amd64 ~x86
-LICENSE=LGPL-3
-RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3
-SLOT=0
-SRC_URI=https://dev.gentoo.org/~jlec/distfiles/beast-mcmc-1.7.5.tar.xz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37
-_md5_=ff6d5ad394902a1137f7b3a310e2da17
diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-9999 b/metadata/md5-cache/sci-biology/beast-mcmc-9999
deleted file mode 100644
index 3c2553392ce7..000000000000
--- a/metadata/md5-cache/sci-biology/beast-mcmc-9999
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile configure install preinst prepare setup test unpack
-DEPEND=>=virtual/jdk-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 dev-java/ant-junit4 >=dev-java/javatoolkit-0.3.0-r2 || ( dev-vcs/subversion[http] dev-vcs/subversion[webdav-neon] dev-vcs/subversion[webdav-serf] ) net-misc/rsync
-DESCRIPTION=Bayesian MCMC of Evolution & Phylogenetics using Molecular Sequences
-EAPI=2
-HOMEPAGE=https://github.com/beast-dev/beast-mcmc
-IUSE=elibc_FreeBSD elibc_FreeBSD
-LICENSE=LGPL-3
-RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3
-SLOT=0
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-ant-2	ea15ab9e838d1062abd6b53de2045d50	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	subversion	a5d5826a85609611f098c0553eb24cc1	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37
-_md5_=8ad11964919894b7a04467aea903b1c3
diff --git a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
deleted file mode 100644
index 263e410f5324..000000000000
--- a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare setup test unpack
-DEPEND=test? ( ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby22? ( doc? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) test? ( ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) )
-DESCRIPTION=An integrated environment for bioinformatics using the Ruby language
-EAPI=5
-HOMEPAGE=http://bioruby.org/
-IUSE=test elibc_FreeBSD ruby_targets_ruby22 doc test test
-KEYWORDS=amd64 ~ppc x86
-LICENSE=Ruby
-RDEPEND=ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] )
-REQUIRED_USE=|| ( ruby_targets_ruby22 )
-SLOT=0
-SRC_URI=http://bioruby.org/archive/bioruby-1.4.3.0001.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	2da44d50080e3d54e1a4ac7d91d149f8	ruby-utils	e5942a80e3c3b936c6b84d6dc4af9f9c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37
-_md5_=0bff0c3e2db3a9967274e417280ca082
diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.1 b/metadata/md5-cache/sci-biology/bioruby-1.5.1
index c3387fecc02c..4fbb5e0fc91a 100644
--- a/metadata/md5-cache/sci-biology/bioruby-1.5.1
+++ b/metadata/md5-cache/sci-biology/bioruby-1.5.1
@@ -4,11 +4,11 @@ DESCRIPTION=An integrated environment for bioinformatics using the Ruby language
 EAPI=6
 HOMEPAGE=http://bioruby.org/
 IUSE=test elibc_FreeBSD ruby_targets_ruby22 ruby_targets_ruby23 doc test test
-KEYWORDS=~amd64 ~ppc ~x86
+KEYWORDS=amd64 ~ppc x86
 LICENSE=Ruby
 RDEPEND=ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] )
 REQUIRED_USE=|| ( ruby_targets_ruby22 ruby_targets_ruby23 )
 SLOT=0
 SRC_URI=mirror://rubygems/bio-1.5.1.gem
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	java-utils-2	0ee72667014428e01a01df2345244cf3	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	2da44d50080e3d54e1a4ac7d91d149f8	ruby-utils	e5942a80e3c3b936c6b84d6dc4af9f9c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37
-_md5_=279e084b7a2a210af63381996d8b6488
+_md5_=86363a7bfb4b82d4d29cabbf3c45a28d