gentoo resync : 09.03.2018

4 files changed, 26 insertions, 14 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 84ae1ebf3a58..ffc4d14d377b 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r3 b/metadata/md5-cache/sci-biology/amos-3.1.0-r3
deleted file mode 100644
index c790eb346839..000000000000
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r3
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure install prepare setup
-DEPEND=qt4? ( dev-qt/qtcore:4 ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=A Modular, Open-Source whole genome assembler
-EAPI=6
-HOMEPAGE=http://amos.sourceforge.net/
-IUSE=qt4 python_targets_python2_7
-KEYWORDS=~amd64 ~x86
-LICENSE=Artistic
-RDEPEND=qt4? ( dev-qt/qtcore:4 ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
-REQUIRED_USE=python_targets_python2_7
-SLOT=0
-SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
-_eclasses_=autotools	4842e626555a9a4344f34cef2e190b67	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
-_md5_=f8ce0df79839e77c09be71e9505f52e4
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4
new file mode 100644
index 000000000000..74961647209f
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4
@@ -0,0 +1,14 @@
+DEFINED_PHASES=configure install prepare setup
+DEPEND=>=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DESCRIPTION=A Modular, Open-Source whole genome assembler
+EAPI=6
+HOMEPAGE=http://amos.sourceforge.net/
+IUSE=python_targets_python2_7
+KEYWORDS=~amd64 ~x86
+LICENSE=Artistic
+RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
+REQUIRED_USE=python_targets_python2_7
+SLOT=0
+SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
+_eclasses_=autotools	4842e626555a9a4344f34cef2e190b67	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf
+_md5_=aec6d1c76d5ea621c66e803800e2b3c4
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
new file mode 100644
index 000000000000..6ce792c94170
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
@@ -0,0 +1,12 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5
+DESCRIPTION=Graphical interface for the ClustalW multiple alignment program
+EAPI=6
+HOMEPAGE=http://www.ebi.ac.uk/tools/clustalw2/
+KEYWORDS=~amd64 ~x86
+LICENSE=GPL-3 LGPL-3
+RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1
+SLOT=0
+SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	estack	43ddf5aaffa7a8d0482df54d25a66a1f	multilib	97f470f374f2e94ccab04a2fb21d811e	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9
+_md5_=939c13314a1b836dad92490ce67ece04