summaryrefslogtreecommitdiff
path: root/eclass/emboss-r2.eclass
diff options
context:
space:
mode:
authorV3n3RiX <venerix@koprulu.sector>2022-04-06 22:33:41 +0100
committerV3n3RiX <venerix@koprulu.sector>2022-04-06 22:33:41 +0100
commite68d405c5d712af4387159df07e226217bdda049 (patch)
tree009ab0f3d427f0813e62930d71802cb054c07e30 /eclass/emboss-r2.eclass
parent401101f9c8077911929d3f2b60a37098460a5d89 (diff)
gentoo resync : 06.04.2022
Diffstat (limited to 'eclass/emboss-r2.eclass')
-rw-r--r--eclass/emboss-r2.eclass161
1 files changed, 0 insertions, 161 deletions
diff --git a/eclass/emboss-r2.eclass b/eclass/emboss-r2.eclass
deleted file mode 100644
index 65e1c83f16d9..000000000000
--- a/eclass/emboss-r2.eclass
+++ /dev/null
@@ -1,161 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-# @DEAD
-# Removal on 2022-03-15.
-
-# @ECLASS: emboss-r2.eclass
-# @MAINTAINER:
-# sci-biology@gentoo.org
-# ted.tanberry@gmail.com
-# @AUTHOR:
-# Original author: Author Olivier Fisette <ofisette@gmail.com>
-# Next gen author: Justin Lecher <jlec@gentoo.org>
-# Next gen author: Ted Tanberry <ted.tanberry@gmail.com>
-# @SUPPORTED_EAPIS: 7
-# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
-# @DESCRIPTION:
-# The inheriting ebuild must provide EBO_DESCRIPTION before the inherit line.
-#
-# Example:
-#
-# EAPI=7
-#
-# EBO_DESCRIPTION="applications from the CBS group"
-#
-# inherit emboss-r2
-
-# @ECLASS_VARIABLE: EBO_DESCRIPTION
-# @PRE_INHERIT
-# @DEFAULT_UNSET
-# @DESCRIPTION:
-# Completes the generic description of the embassy module as follows:
-#
-# EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g.
-#
-# "EMBOSS integrated version of applications from the CBS group"
-#
-# Defaults to the upstream name of the module.
-
-case ${EAPI:-0} in
- [0-6]) die "Unsupported EAPI=${EAPI:-0} (too old) for ${ECLASS}" ;;
- 7) ;;
- *) die "Unsupported EAPI=${EAPI} (unknown) for ${ECLASS}" ;;
-esac
-
-if [[ ! ${_EMBOSS_R2_ECLASS} ]]; then
-_EMBOSS_R2_ECLASS=1
-
-inherit autotools flag-o-matic
-
-HOMEPAGE="http://emboss.sourceforge.net/"
-
-LICENSE="LGPL-2 GPL-2"
-SLOT="0"
-IUSE="mysql pdf png postgres X"
-
-RDEPEND="
- dev-libs/expat
- dev-libs/libpcre:3
- sci-libs/plplot:=
- sys-libs/zlib
- mysql? ( dev-db/mysql-connector-c:0= )
- pdf? ( media-libs/libharu:= )
- png? ( media-libs/gd:2=[png] )
- postgres? ( dev-db/postgresql:= )
- X? ( x11-libs/libXt )"
-
-if [[ ${PN} == embassy-* ]]; then
- EMBASSY_PACKAGE=yes
- # The EMBASSY package name, retrieved from the inheriting ebuild's name
- EN=${PN:8}
- # The full name and version of the EMBASSY package (excluding the Gentoo
- # revision number)
- EF="${EN^^}-${PV}"
-
- [[ ${EBO_DESCRIPTION} ]] || die "EBO_DESCRIPTION was not set before inheriting emboss-r2.eclass"
-
- DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
- SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PV}.tar.gz"
- RDEPEND+=" >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]"
-
- S="${WORKDIR}/${EF}"
-fi
-
-DEPEND="${RDEPEND}"
-
-# @ECLASS_VARIABLE: EBO_EAUTORECONF
-# @DEFAULT_UNSET
-# @DESCRIPTION:
-# If set, run eautoreconf from autotools.eclass after applying patches
-# in emboss-r2_src_prepare.
-
-# @FUNCTION: emboss-r2_src_prepare
-# @DESCRIPTION:
-# Does the following things
-#
-# 1. Renames configure.in to configure.ac, if possible
-# 2. Calls default_src_prepare (i.e. applies Gentoo and user patches)
-# 3. If EBO_EAUTORECONF is set, run eautoreconf
-
-emboss-r2_src_prepare() {
- if [[ -e configure.in ]]; then
- mv configure.{in,ac} || die
- fi
-
- default
- [[ ${EBO_EAUTORECONF} ]] && eautoreconf
-}
-
-# @FUNCTION: emboss-r2_src_configure
-# @DESCRIPTION:
-# runs econf with following options.
-#
-# --enable-shared
-# --disable-static
-# $(use_with X x)
-# $(use_with png pngdriver)
-# $(use_with pdf hpdf)
-# $(use_with mysql mysql)
-# $(use_with postgres postgresql)
-# --enable-large
-# --without-java
-# --enable-systemlibs
-#
-# can be appended to like econf, e.g.
-# emboss-r2_src_configure --enable-foo
-
-emboss-r2_src_configure() {
- local myconf=(
- --enable-shared
- --disable-static
- $(use_with X x)
- $(use_with png pngdriver "${EPREFIX}"/usr)
- $(use_with pdf hpdf "${EPREFIX}"/usr)
- $(use_with mysql mysql "${EPREFIX}"/usr/bin/mysql_config)
- $(use_with postgres postgresql "${EPREFIX}"/usr/bin/pg_config)
- --enable-large
- --without-java
- --enable-systemlibs
- )
-
- [[ ${EMBASSY_PACKAGE} == yes ]] && \
- append-cppflags "-I${EPREFIX}/usr/include/emboss"
-
- econf "${myconf[@]}" "$@"
-}
-
-# @FUNCTION: emboss-r2_src_install
-# @DESCRIPTION:
-# Installs the package into the staging area and removes unnecessary .la files.
-
-emboss-r2_src_install() {
- default
-
- # delete .la files
- find "${ED}" -name '*.la' -delete || die
-}
-
-fi
-
-EXPORT_FUNCTIONS src_prepare src_configure src_install