gentoo resync : 14.07.2018

7 files changed, 311 insertions, 0 deletions

diff --git a/dev-python/statsmodels/Manifest b/dev-python/statsmodels/Manifest
new file mode 100644
index 000000000000..78e268773ca4
--- /dev/null
+++ b/dev-python/statsmodels/Manifest
@@ -0,0 +1,8 @@
+AUX statsmodels-0.6.1-numpy-1.10.patch 910 BLAKE2B cfff850a68733641fdad5913529e6f181b24ee1c541c8bd1f74752b3ec1cb60ba85ebd1627b76c103ee34e231c02da2db3072619cc25fe5b9cb7b5593d77d9a2 SHA512 deffc2539641a91e728f3b8b5e4d6d98efe2b874491aca360ca945d8dc6774bf14b3e14796e1440728a8faad4472c846c69d4278301e37a29689adbab1e74c63
+AUX statsmodels-0.6.1-pandas-0.17.0.patch 1043 BLAKE2B 0473214de500e911a36cf3ba645b57536ea6ada17f7123d193d31fb266ba07724aad7297cd705b51b34a394791656a72b891ab94cbf3969935b59324813a0100 SHA512 0a4394d672105337fd03d435a402dbd31862a39b8010658f859114ed9694de9be4d6c3d641b5f385986a6651f0434a3602659d7192bf99f749e49f33f53a634b
+DIST statsmodels-0.6.1.tar.gz 6980841 BLAKE2B 5ac16df0fc06d051cc79d037bd3a9b097526498a48cdc0bf750babd5915f27a0dea23d8869a5101c62bb780ec0c54c503a766c7da6db59fb8d10dc65c70268b1 SHA512 9047b8cf4b9d19bd697867cecef1c4608fd86f3d16e67e44d8c152e1e25918f5aff6b4843c58395e71614be401551e3e48d4dcf158480cbdb45d9735b1c5ea77
+DIST statsmodels-0.8.0.tar.gz 9464851 BLAKE2B f4bcf38c0292dcdfef9e3e34519f4dff004795bf76f54773f551c6c767f16f9cee0a2756408cff6f727df8eebc269bccf2c8bd28915a729eb022eba34831628e SHA512 32bb7f36acc16796c445e5f695d958af4525fbbb2d374376fb4a73c972e3796fad05532456cef4aa5ee59d6fce11921174e17bbfc2e05d2488ce1ceac5175239
+EBUILD statsmodels-0.6.1.ebuild 1790 BLAKE2B fcb7c3ad951c5bad5ea3d5bf6e373db02a75b1a210e751c5a98353818103e616114cd86edc3caa42df81bb72cf3e9bd88ee69421913ef0dafc3f7bf49f7f12af SHA512 0db7b9c98d5d9b2a6436c073bcc2172c5b9938f0f4cd5c7256ebe4e5725dc65b3dac80186397d2516b5a5fd29fc6db93afc0caf031d239010b0ef07685c6224a
+EBUILD statsmodels-0.8.0.ebuild 1954 BLAKE2B 660db988aff6c18c625065226a560f3740780ab20afeba4b4deff8a740a789ace1593e420cda8e7503f69fbc2a8f95a01e539fde60d46c3783e81d12948c10e9 SHA512 48f61224be4b2b960a147cdcef7d28e1f1d4eefce6f7526e16816a350fa75a24854fad5b49715081f749b8812f79aac07ae3ff88a031a02b7943191e4780fdc0
+EBUILD statsmodels-9999.ebuild 1919 BLAKE2B 4fc6380ed66d02d713ac95d3e4df8ccd5ccd664728145cbd5efeef37e3582b9fb3c5eb7f7b3dd7d66b00494687e822723dd391fba144cba1ab9dab33e85b3862 SHA512 be09fd1121ea2beee8e307df2bf9c6e822006e22f70d95bd11cdacea2c67962dd39a2c6b17e7f618eacfca354cbd9bf78ae95cc9bcf711c3d6c18f3c2040d6ca
+MISC metadata.xml 1075 BLAKE2B 86672821dcfcd4f52b35f953c2024646ac8bcd937b30ce7fd8c0d1411d5cefe64cc7e8943d1b073c81fbbb4cdee348b30c93fd8145651088f8f88d01ca9e742d SHA512 7e9c385a1820da33e55db49d582d750f01fd11c0dd1616470f2cd71f12c673010cf76c8af984472daa8787704d353f2d42f60798e419d182c9e24ba4dd7dd97f
diff --git a/dev-python/statsmodels/files/statsmodels-0.6.1-numpy-1.10.patch b/dev-python/statsmodels/files/statsmodels-0.6.1-numpy-1.10.patch
new file mode 100644
index 000000000000..2d9720c5fec6
--- /dev/null
+++ b/dev-python/statsmodels/files/statsmodels-0.6.1-numpy-1.10.patch
@@ -0,0 +1,20 @@
+ statsmodels/tsa/ar_model.py | 6 ++----
+ 1 file changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/statsmodels/tsa/ar_model.py b/statsmodels/tsa/ar_model.py
+index f0af7ee..fe05634 100644
+--- a/statsmodels/tsa/ar_model.py
++++ b/statsmodels/tsa/ar_model.py
+@@ -256,10 +256,8 @@ class AR(tsbase.TimeSeriesModel):
+ 
+         Vpinv = np.zeros((p, p), dtype=params.dtype)
+         for i in range(1, p1):
+-            Vpinv[i-1, i-1:] = np.correlate(params0, params0[:i],
+-                                            old_behavior=False)[:-1]
+-            Vpinv[i-1, i-1:] -= np.correlate(params0[-i:], params0,
+-                                             old_behavior=False)[:-1]
++            Vpinv[i-1, i-1:] = np.correlate(params0, params0[:i])[:-1]
++            Vpinv[i-1, i-1:] -= np.correlate(params0[-i:], params0)[:-1]
+ 
+         Vpinv = Vpinv + Vpinv.T - np.diag(Vpinv.diagonal())
+         return Vpinv
diff --git a/dev-python/statsmodels/files/statsmodels-0.6.1-pandas-0.17.0.patch b/dev-python/statsmodels/files/statsmodels-0.6.1-pandas-0.17.0.patch
new file mode 100644
index 000000000000..540135c9e125
--- /dev/null
+++ b/dev-python/statsmodels/files/statsmodels-0.6.1-pandas-0.17.0.patch
@@ -0,0 +1,30 @@
+ setup.py                     | 2 +-
+ statsmodels/tools/testing.py | 2 +-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/setup.py b/setup.py
+index 1a7da9a..a6d1b33 100644
+--- a/setup.py
++++ b/setup.py
+@@ -134,7 +134,7 @@ def check_dependency_versions(min_versions):
+                               (spversion, min_versions['scipy']))
+ 
+     try:
+-        from pandas.version import short_version as pversion
++        from pandas import __version__ as pversion
+     except ImportError:
+         install_requires.append('pandas')
+     else:
+diff --git a/statsmodels/tools/testing.py b/statsmodels/tools/testing.py
+index 1fde1de..92e77fc 100644
+--- a/statsmodels/tools/testing.py
++++ b/statsmodels/tools/testing.py
+@@ -17,7 +17,7 @@ def strip_rc(version):
+ def is_pandas_min_version(min_version):
+     '''check whether pandas is at least min_version
+     '''
+-    from pandas.version import short_version as pversion
++    from pandas import __version__ as pversion
+     return StrictVersion(strip_rc(pversion)) >= min_version
+ 
+ 
diff --git a/dev-python/statsmodels/metadata.xml b/dev-python/statsmodels/metadata.xml
new file mode 100644
index 000000000000..cb9b89704bd8
--- /dev/null
+++ b/dev-python/statsmodels/metadata.xml
@@ -0,0 +1,26 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>python@gentoo.org</email>
+    <name>Python</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-mathematics@gentoo.org</email>
+    <name>Gentoo Mathematics Project</name>
+  </maintainer>
+  <longdescription lang="en">
+    statsmodels is a Python module that allows users to explore data,
+    estimate statistical models, and perform statistical tests. An
+    extensive list of descriptive statistics, statistical tests,
+    plotting functions, and result statistics are available for
+    different types of data and each estimator. Researchers across
+    fields may find that statsmodels fully meets their needs for
+    statistical computing and data analysis in Python.
+  </longdescription>
+  <upstream>
+    <remote-id type="pypi">statsmodels</remote-id>
+    <remote-id type="github">statsmodels</remote-id>
+    <remote-id type="sourceforge">statsmodels</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/dev-python/statsmodels/statsmodels-0.6.1.ebuild b/dev-python/statsmodels/statsmodels-0.6.1.ebuild
new file mode 100644
index 000000000000..a7e420010582
--- /dev/null
+++ b/dev-python/statsmodels/statsmodels-0.6.1.ebuild
@@ -0,0 +1,75 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1 virtualx
+
+DESCRIPTION="Statistical computations and models for use with SciPy"
+HOMEPAGE="https://www.statsmodels.org/stable/index.html"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples test"
+
+CDEPEND="
+	>=dev-python/numpy-1.5.1[${PYTHON_USEDEP}]
+	>=dev-python/pandas-0.7.1[${PYTHON_USEDEP}]
+	>=dev-python/patsy-0.3.0[${PYTHON_USEDEP}]
+	>=sci-libs/scipy-0.9.0[${PYTHON_USEDEP}]
+	"
+RDEPEND="${CDEPEND}
+	examples? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
+DEPEND="${CDEPEND}
+	>=dev-python/cython-0.20.1[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? (
+		>=dev-python/matplotlib-1.1[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+		dev-python/ipython[${PYTHON_USEDEP}]
+		)
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-pandas-0.17.0.patch
+	"${FILESDIR}"/${P}-numpy-1.10.patch
+)
+
+pkg_setup() {
+	export MPLCONFIGDIR="${T}" HOME="${T}"
+}
+
+python_compile_all() {
+	if use doc; then
+		VARTEXFONTS="${T}"/fonts ${EPYTHON} setup.py build_sphinx || die
+	fi
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	VIRTUALX_COMMAND="nosetests"
+	virtualmake --verbosity=3
+}
+
+python_install() {
+	distutils-r1_python_install
+}
+
+python_install_all() {
+	find "${S}" -name \*LICENSE.txt -delete
+	use doc && HTML_DOCS=( build/sphinx/html/* )
+	if use examples; then
+		docompress -x /usr/share/doc/${PF}/examples
+		insinto /usr/share/doc/${PF}
+		doins -r examples
+	fi
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "plotting functionality" ">=dev-python/matplotlib-1.1"
+}
diff --git a/dev-python/statsmodels/statsmodels-0.8.0.ebuild b/dev-python/statsmodels/statsmodels-0.8.0.ebuild
new file mode 100644
index 000000000000..3aedbad099a4
--- /dev/null
+++ b/dev-python/statsmodels/statsmodels-0.8.0.ebuild
@@ -0,0 +1,75 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1 virtualx
+
+DESCRIPTION="Statistical computations and models for use with SciPy"
+HOMEPAGE="https://www.statsmodels.org/stable/index.html"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples test"
+
+CDEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/patsy[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+RDEPEND="${CDEPEND}
+	examples? ( dev-python/matplotlib[${PYTHON_USEDEP}] )
+"
+DEPEND="${CDEPEND}
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? (
+		dev-python/ipykernel[${PYTHON_USEDEP}]
+		dev-python/jupyter_client[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbconvert[${PYTHON_USEDEP}]
+		dev-python/nbformat[${PYTHON_USEDEP}]
+		dev-python/numpydoc[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+	)
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )
+"
+
+python_prepare_all() {
+	# Prevent un-needed d'loading
+	sed -e "/sphinx.ext.intersphinx/d" -i docs/source/conf.py || die
+	export VARTEXFONTS="${T}"/fonts
+	export MPLCONFIGDIR="${T}"
+	export HOME="${T}"
+	echo "backend : Agg" > "${MPLCONFIGDIR}"/matplotlibrc || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	use doc && esetup.py build_sphinx -b html --build-dir=docs/build
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	virtx nosetests -v || die
+}
+
+python_install_all() {
+	find "${S}" -name \*LICENSE.txt -delete
+	use doc && HTML_DOCS=( docs/build/html/* )
+	if use examples; then
+		docompress -x /usr/share/doc/${PF}/examples
+		insinto /usr/share/doc/${PF}
+		doins -r examples
+	fi
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "Plotting functionality" "dev-python/matplotlib"
+}
diff --git a/dev-python/statsmodels/statsmodels-9999.ebuild b/dev-python/statsmodels/statsmodels-9999.ebuild
new file mode 100644
index 000000000000..a3afaa73d94b
--- /dev/null
+++ b/dev-python/statsmodels/statsmodels-9999.ebuild
@@ -0,0 +1,77 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1 git-r3 virtualx
+
+DESCRIPTION="Statistical computations and models for use with SciPy"
+HOMEPAGE="https://www.statsmodels.org/stable/index.html"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/statsmodels/statsmodels.git"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS=""
+IUSE="doc examples test"
+
+CDEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/patsy[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+RDEPEND="${CDEPEND}
+	examples? ( dev-python/matplotlib[${PYTHON_USEDEP}] )
+"
+DEPEND="${CDEPEND}
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? (
+		dev-python/ipykernel[${PYTHON_USEDEP}]
+		dev-python/jupyter_client[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbconvert[${PYTHON_USEDEP}]
+		dev-python/nbformat[${PYTHON_USEDEP}]
+		dev-python/numpydoc[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+	)
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )
+"
+
+python_prepare_all() {
+	# Prevent un-needed d'loading
+	sed -e "/sphinx.ext.intersphinx/d" -i docs/source/conf.py || die
+	export VARTEXFONTS="${T}"/fonts
+	export MPLCONFIGDIR="${T}"
+	export HOME="${T}"
+	echo "backend : Agg" > "${MPLCONFIGDIR}"/matplotlibrc || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	if use doc; then
+		esetup.py build_sphinx -b html --build-dir=docs/build
+		HTML_DOCS=( docs/build/html/. )
+	fi
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	virtx nosetests -v || die
+}
+
+python_install_all() {
+	find "${S}" -name \*LICENSE.txt -delete
+	if use examples; then
+		docompress -x /usr/share/doc/${PF}/examples
+		dodoc -r examples
+	fi
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "Plotting functionality" "dev-python/matplotlib"
+}