gentoo auto-resync : 11:04:2024 - 06:32:47

2 files changed, 99 insertions, 0 deletions

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index f7709a2e5084..80499c5fb837 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -2,6 +2,8 @@ AUX scikit-image-0.22.0-no-numpydoc.patch 1664 BLAKE2B 65a4b565069bf21a44deae1de
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B 7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1 SHA512 4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48
 DIST scikit_image-0.23.0rc2.tar.gz 22677632 BLAKE2B b663065650e25a33ffec80ddd05df622bc62b1c1d3d0a831488d4dd23291b4f125458ae335782762b1d4dc1efa8cbedd5fcd7e6bbe62003967209e4ca4179bca SHA512 aa5f27d571ea49276aba8443a691b30a576d52145a17f13b8ea080a2abf0ed01c57fe50324c05e72bb4662a9ddbb480be94be6784ac3220ed6853b12d94ae06b
+DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B 2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726 SHA512 7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6
 EBUILD scikit-image-0.22.0.ebuild 1822 BLAKE2B ccae73d104116b5c956ad569a059409d93b269a351c7e79cc8b5980948e3e02d49f1a4113c070ef665a3c754374cc90d229673336e3881ea5d5087ab1315ca95 SHA512 4ea0cd851a68620e802347906fc05390cc32020d33f688d93be3f2103a68b9cbcd0b3b2aae21136039e878b70710940aacfadc77e1743af65a98b5a6441e1a84
 EBUILD scikit-image-0.23.0_rc2.ebuild 3266 BLAKE2B c9bcb955f32dd6dc8d5674b9ac752f75b45bed0b0da517634151b30a0a9459b17d49c57b332027acf7abf090bb9f8930fb0b6f59478c80bf565073fa7d1852b6 SHA512 fe6ab5b29fc4951a5b30187d6951d04d64448faac3fbaa2110be0d26cb564090ca2d16e72e1684cd89abd7bd32e987c76f6e9f9a6aaa0dd09c679535386f9462
+EBUILD scikit-image-0.23.1.ebuild 3266 BLAKE2B 2db28394ccba7f5a76119cb7226353011b8ef9e6a259036a6c7e08cd847b7955a8d34bab052299c0ce97c2fa4a1106631c4140838de57eef12d5a77ca99ac510 SHA512 c4fc85ccc675a6912bae933a2bc8dbda65bc729ea7057ca68983a88322ee54f82b383a1a9d8f2f025b5db90d1e8c8c3c850e32e68c7d237eda4ac62d04e9e723
 MISC metadata.xml 695 BLAKE2B 11487b964bde2ce1a39a8680bc3cc62045c4a7e2e17844de830d5f0e043660c431cd002a2a0fc19acb4c0262289ee280195475dd1f8b35f6a51ce0df369871f8 SHA512 fca83587d443373fc7219911900105676bdba5a7ced07ac00a9ab5cbe361d8ca1175b02b04fa53cdbde6f198a986b21f989baf32139cd76b7d1b2b78034d3142
diff --git a/dev-python/scikit-image/scikit-image-0.23.1.ebuild b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
new file mode 100644
index 000000000000..cb08918d42e9
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "Parallel computation" dev-python/dask
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}