gentoo resync : 02.02.2022

3 files changed, 209 insertions, 0 deletions

diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 4567afb174de..58b6577bced2 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,8 +1,11 @@
 AUX pandas-1.3.4-arm-tests.patch 665 BLAKE2B 0096cffbc1830005a89026e1fcf06d8e579303c676ef7da6a28b2209748bc8d716cccfb6671d60dc3eeae08cd2d305e0a0b9584ac173f01689a730a8745ca62d SHA512 be52d5e92de40af9fff06bfa9fc9b3ef6443959b92dfa72a8f0b4aa73ec2690af2162552aeb5f189ea6806146ae49ae520013f071d8c640d378ce29862ae7d74
+AUX pandas-1.4.0-distutils-hack-assertion.patch 439 BLAKE2B 6753d2a86071109b586a0ea957acb2db1d394bed2a6ad0ede53d7ae4bce81e034ba8e929611aae701cc51ab8d9ef95c8c2d608ad3f9def16aed6fc5ae237fb68 SHA512 04a3644dbc5d07859fea162877a528124b8b0af8288464dc86c394675006710f73653af58ad188d3d628c356c66c201190dbc6d3e77c9d9d0a3b2f4c758e014b
 DIST pandas-1.3.3.tar.gz 4730758 BLAKE2B 0ef945b2181329265b93fbdb7f9c35497ef847508cc2166b6e2a12ad1a2faa3940d5c8f375754ec34db4e236934a1f903f1e58e6882c6de0018a16b38f50f136 SHA512 a3a871a9954c7249311b9904e588d85fba4d6aa07463308b08b789b93a1eb63e36dac1b0d4254a5379085c05c5633ef31b615d0c60963c796dd7a33d815a5534
 DIST pandas-1.3.4.tar.gz 4734599 BLAKE2B a71b5b57198defcf4f6d848f445c7112668994f089b62a6bce1028ab4ba8a9bf3adc3c393699332fb0c76818ed80164843114e68e57232c495cee03ec5e88009 SHA512 c821365b1f06d69c61b957c4768a5f86b39d97d74b0732ea0eaade9d21bca8f652e38f91f83adf2fc6488f227c75d4e5e64e8f131456e7f0a93ecfcf237190a6
 DIST pandas-1.3.5.tar.gz 4736591 BLAKE2B 7c7de1485028d7c610c5a23ca1cc98551b24e824b609b7a624469f2471bb8d3984a25db48ab7413aa7cdd0057c5c5c9f1eb2b59cfc5cbf6d30177e12e2acc7b3 SHA512 cf3f76894cae19784af6393d4a575d114b55621a3d594edd7e95ac6d5c8588a580135789c859c618acfeceeb710d2a1fdd94188a839a90be6b58af929e00a726
+DIST pandas-1.4.0.tar.gz 4935046 BLAKE2B f579abe78812d9c155c2d08708f6b46ac7363d351a750cc5b2017aa641f5307ae0baa7de57866dbefe74790133d2219d6742cb6f015f8a360365cf30345a0b44 SHA512 800909c4e80ab50391e22bf67ccd78532730e200bc58ffc32d4a6b9e37522a90e2ed486a02f67a4df1e28fa531c075e0caadc2c8a06b8a06c7f2ef466a371489
 EBUILD pandas-1.3.3.ebuild 6405 BLAKE2B febec6c5f64825e4979d016c24d3862489f8398a75b56e2f475085e2e7b47b3e7c1f52e6f14a22dc330b596037941660c33074e1895cfc9b3f70baff2ac92a01 SHA512 9922f2a2982b8c2fbcdca8ffd60cf5af99d6dd083eb2324665eaffd6c1259d2de5edb2a04503df90a92f180faa50efef9a9364e291ae9c4a906a41f585e548dc
 EBUILD pandas-1.3.4.ebuild 6682 BLAKE2B 35b9e8f4a7711542007aa3f5a2fcb6a405809b80d38ba831d7d5b1136d4cfc15ae93f92ab420051187842b7509bce59c917dcf386911c118bfa3e721cf913b38 SHA512 183696d80180fe8d68696258981717ca946a450aae9ec1bc6dcdd005c555d649dee721a4fa758bc683f2b6b52548c1f6c98db98afb2929b5481accd963adc8b0
 EBUILD pandas-1.3.5.ebuild 6581 BLAKE2B f772f6430251cfbe23a4c024977d386bff7d7125a0912b41f9ca27f1442487add94d130f434752f515ab96d71ab4cb8fd5e5f9761591242f0e60bae2264838b2 SHA512 2b7c4fade2f48c574011c153861f2d832256f60da019220122ea078aec32aa9ae073119d4a9dedba08bd98a16bcdd64e2a4ea822ca52aec9affe689c4d613c84
+EBUILD pandas-1.4.0.ebuild 6280 BLAKE2B c65541e7f269facf4a5c912b3392382f76e19b05267e18e0375454a6eae30937b8212763e1052ac6f48a04ccb2c313226b9479f01782a9b7924bcc5e3717c033 SHA512 2aad9465787cd3b58865adfb7fed3056da35080c66975d120728777cf20ab57e4cf51f32e2672eaa39dd72f47538edaeaf6deac4a21b7117e26899d862973b91
 MISC metadata.xml 918 BLAKE2B 09b6ef472cbceaade61bfec8780ba3659838cd73f0a19b277d731db75655ac7e65d396f9fa74c19a2d5e03269c541dfe2af59296c048e77744f00bdb55295d4d SHA512 0b1fd089b0ce35a4e3408cd7224a249d427571a638961a8d63dee73b386d03b5a22e4ff085e2e548749f9fc03e9beb18317010d0b67f608dafe305bb4a87ddb2
diff --git a/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch b/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
new file mode 100644
index 000000000000..4842de94311f
--- /dev/null
+++ b/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
@@ -0,0 +1,14 @@
+diff --git a/pandas/util/_print_versions.py b/pandas/util/_print_versions.py
+index 289900c473..91d518d1ab 100644
+--- a/pandas/util/_print_versions.py
++++ b/pandas/util/_print_versions.py
+@@ -60,8 +60,8 @@ def _get_dependency_info() -> dict[str, JSONSerializable]:
+         "pytz",
+         "dateutil",
+         # install / build,
+-        "pip",
+         "setuptools",
++        "pip",
+         "Cython",
+         # test
+         "pytest",
diff --git a/dev-python/pandas/pandas-1.4.0.ebuild b/dev-python/pandas/pandas-1.4.0.ebuild
new file mode 100644
index 000000000000..a29bcb00cd44
--- /dev/null
+++ b/dev-python/pandas/pandas-1.4.0.ebuild
@@ -0,0 +1,192 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
+SRC_URI="
+	https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
+S="${WORKDIR}/${P/_/}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+	>=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+	>=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+OPTIONAL_DEPEND="
+	dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+	dev-python/blosc[${PYTHON_USEDEP}]
+	|| (
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+	)
+	dev-python/jinja[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	|| (
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+	)
+	>=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+	>=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
+	>=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
+	>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
+	>=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+	!hppa? (
+		dev-python/statsmodels[${PYTHON_USEDEP}]
+		>=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+	)
+	X? (
+		|| (
+			dev-python/PyQt5[${PYTHON_USEDEP}]
+			x11-misc/xclip
+			x11-misc/xsel
+		)
+	)
+"
+COMMON_DEPEND="
+	>=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
+	>=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
+	>=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+DEPEND="${COMMON_DEPEND}
+	>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+	doc? (
+		${VIRTUALX_DEPEND}
+		app-text/pandoc
+		dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/ipython[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbsphinx[${PYTHON_USEDEP}]
+		>=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+		>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+		>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+		dev-python/pytz[${PYTHON_USEDEP}]
+		dev-python/rpy[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+		dev-python/xlrd[${PYTHON_USEDEP}]
+		dev-python/xlwt[${PYTHON_USEDEP}]
+		dev-python/scipy[${PYTHON_USEDEP}]
+		x11-misc/xclip
+	)
+	test? (
+		${VIRTUALX_DEPEND}
+		${RECOMMENDED_DEPEND}
+		${OPTIONAL_DEPEND}
+		dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+		>=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/pymysql[${PYTHON_USEDEP}]
+		>=dev-python/pytest-6[${PYTHON_USEDEP}]
+		>=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
+		dev-python/psycopg:2[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+		x11-misc/xclip
+		x11-misc/xsel
+	)
+"
+# dev-python/statsmodels invokes a circular dep
+#  hence rm from doc? ( ), again
+RDEPEND="${COMMON_DEPEND}
+	!minimal? ( ${RECOMMENDED_DEPEND} )
+	full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+	local PATCHES=(
+		# https://github.com/pandas-dev/pandas/issues/44980
+		"${FILESDIR}"/${P}-distutils-hack-assertion.patch
+	)
+
+	# Prevent un-needed download during build
+	sed -e "/^              'sphinx.ext.intersphinx',/d" \
+		-i doc/source/conf.py || die
+
+	# requires package installed
+	sed -e '/extra_compile_args =/s:"-Werror"::' \
+		-i setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	distutils-r1_python_compile -j1
+}
+
+python_compile_all() {
+	# To build docs the need be located in $BUILD_DIR,
+	# else PYTHONPATH points to unusable modules.
+	if use doc; then
+		cd "${BUILD_DIR}"/lib || die
+		cp -ar "${S}"/doc . && cd doc || die
+		LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+	fi
+}
+
+src_test() {
+	virtx distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# test for rounding errors, fails if we have better precision
+		# e.g. on amd64 with FMA or on arm64
+		# https://github.com/pandas-dev/pandas/issues/38921
+		pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+		# TODO
+		pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
+		pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
+	)
+
+	local -x LC_ALL=C.UTF-8
+	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+	"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+	epytest pandas --skip-slow --skip-network -m "not single" \
+		-n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" ||
+		die "Tests failed with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+		einfo "An initial build of docs is absent of references to statsmodels"
+		einfo "due to circular dependency. To have them included, emerge"
+		einfo "statsmodels next and re-emerge pandas with USE doc"
+	fi
+
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+	optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+	optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+	optfeature "for msgpack compression using blosc" dev-python/blosc
+	optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+	optfeature "Plotting support" dev-python/matplotlib
+	optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+	optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
+	optfeature "R I/O support" dev-python/rpy
+	optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+	optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
+	optfeature "miscellaneous statistical functions" dev-python/scipy
+	optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}