gentoo resync : 15.01.2020

4 files changed, 259 insertions, 0 deletions

diff --git a/dev-python/numpy-python2/Manifest b/dev-python/numpy-python2/Manifest
new file mode 100644
index 000000000000..2f0cd3101b82
--- /dev/null
+++ b/dev-python/numpy-python2/Manifest
@@ -0,0 +1,7 @@
+AUX numpy-1.15.4-no-hardcode-blas.patch 3841 BLAKE2B 19ddde096b5b0b1d3c0a98e16c14b96cf9c16ec5d96736ec561f14535fe240eaa8fbe71f396d432ce557b78b18a98ad8684724614f201b1d6151c8edfd07f483 SHA512 8f870f8a52c096f6f0f614dc64ff6d5ed8d8805e14723c60c6e85b69cf915fc698e808f3fcafce75a6ea9e7eb728949dc56ef823d70963d25658e50aa8becaae
+DIST numpy-1.16.5.zip 5138208 BLAKE2B f5511650e66939a6ce21cfad7874aecdeb6c07a70b32419a808956e42c7819d82bb364f1632da91b4d8a5237001c8ae3cbdcac10651fa0acca9558bdeafb5437 SHA512 6dd790ff57fdb7e7b0bddb47ea2b70b2667edefe632548ec68934e12a16af4a51bed9726e495c4993aad4c448dc4a204d0a087577d43dcfc9fa0164eb1d4b898
+DIST numpy-html-1.16.4.zip 12097069 BLAKE2B db1f897342fbc80a761fbaee7b0eee3761dbfa04ef6c46a137bb2392caaec8256580467ce06498cceeada2639151a1ec75dafab484d64cb897c008727d6d32a5 SHA512 c44c5e1e0cb22f9dd46fe9e302030292d85e567456178fee296746a414271634e906509fb6665ac63fbfebdd13c5383574f0aa47b4fbc639063da31addc3316a
+DIST numpy-ref-1.16.4.pdf 5176571 BLAKE2B 9a875ebd1473b241d463d810a6d191581aef961158f2f82959671b554ace3ad482795e4f3e1cb7dd4632cff926c1e864c675a7624fb0f4e4f297948bf50f0564 SHA512 983ba0f34a70c011886bdbc9fd8f3f75a3a967ca29217acc76fa46e7da391296a5628c9a557ac76efb393271abfb8ee4f376d401c1cc1e5c30622e54b9325d09
+DIST numpy-user-1.16.4.pdf 596203 BLAKE2B da3ad1f0ec1c965d20656f73a970911cbb58efa73a5df89e2e6485e0dd763f483e35eea1395ac919bf35d496fb216cee954fc5d31edebc1796a24a2a7a2d12b9 SHA512 3083008547213bfa98ffa5cd8e2cea13f6947f42d83aef61502a2a852b0d5f27d727c76b42d281d7a2f4f76c78e88b12ee3d9b164b39fe1f0213ace7097357d6
+EBUILD numpy-python2-1.16.5.ebuild 4400 BLAKE2B 72633645c512ec0a25e573112b17f3c0c7155bf2dd75c501fb0e5639d4ba34e541c3048abd3c218908ec2dfaf65503721a97919c97e544f9fc4f29d2492f0b5b SHA512 2e9250eb0829e298fed57153e13706169d07aa49650251d9dc9602fe7d55f6e094b462c02f2931a2ff8f06bd932fd75279d884314090f8eb201c021afd58f2a4
+MISC metadata.xml 216 BLAKE2B 0fbfa16661345362ff89f87adc0bb42fc5f5c9145cdedb36f3f537b39af4023b91c4dfb0d8e83a4f9ac963141f594ba8ae678371c338d992a96e02c11fd84195 SHA512 628a69805356b7458edaa2297901224178b016477a937f77e692a78ce3e7a0b6d2d7b4c4b7e70d0185d7112e6a59a5131e07d8c950e90b9c8722471d7511afc6
diff --git a/dev-python/numpy-python2/files/numpy-1.15.4-no-hardcode-blas.patch b/dev-python/numpy-python2/files/numpy-1.15.4-no-hardcode-blas.patch
new file mode 100644
index 000000000000..979b56bd6dc5
--- /dev/null
+++ b/dev-python/numpy-python2/files/numpy-1.15.4-no-hardcode-blas.patch
@@ -0,0 +1,76 @@
+diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
+index 65d7de316..a85640d30 100644
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -364,29 +364,7 @@ def get_info(name, notfound_action=0):
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'atlas_3_10': atlas_3_10_info,  # use lapack_opt or blas_opt instead
+-          'atlas_3_10_threads': atlas_3_10_threads_info,                # ditto
+-          'atlas_3_10_blas': atlas_3_10_blas_info,
+-          'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+-          'lapack_atlas_3_10': lapack_atlas_3_10_info,  # use lapack_opt instead
+-          'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          # openblas which may or may not have embedded lapack
+-          'openblas': openblas_info,          # use blas_opt instead
+-          # openblas with embedded lapack
+-          'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+-          'openblas_clapack': openblas_clapack_info, # use blas_opt instead
+-          'blis': blis_info,                  # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'accelerate': accelerate_info,      # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,
+@@ -731,10 +709,7 @@ class system_info(object):
+         return [b for b in [a.strip() for a in libs.split(',')] if b]
+ 
+     def get_libraries(self, key='libraries'):
+-        if hasattr(self, '_lib_names'):
+-            return self.get_libs(key, default=self._lib_names)
+-        else:
+-            return self.get_libs(key, '')
++        return self.get_libs(key, '')
+ 
+     def library_extensions(self):
+         c = customized_ccompiler()
+@@ -1685,7 +1660,7 @@ class blas_info(system_info):
+             lib = self.has_cblas(info)
+             if lib is not None:
+                 info['language'] = 'c'
+-                info['libraries'] = [lib]
++                info['libraries'] = lib
+                 info['define_macros'] = [('HAVE_CBLAS', None)]
+         self.set_info(**info)
+ 
+@@ -1717,16 +1692,16 @@ class blas_info(system_info):
+                 # check for cblas lib, and if not present check for blas lib.
+                 try:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+-                                      libraries=["cblas"],
++                                      libraries=info["libraries"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "cblas"
++                    res = info["libraries"]
+                 except distutils.ccompiler.LinkError:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+                                       libraries=["blas"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "blas"
++                    res = ["blas"]
+             except distutils.ccompiler.CompileError:
+                 res = None
+         finally:
diff --git a/dev-python/numpy-python2/metadata.xml b/dev-python/numpy-python2/metadata.xml
new file mode 100644
index 000000000000..020b40648ee8
--- /dev/null
+++ b/dev-python/numpy-python2/metadata.xml
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>pacho@gentoo.org</email>
+	</maintainer>
+</pkgmetadata>
diff --git a/dev-python/numpy-python2/numpy-python2-1.16.5.ebuild b/dev-python/numpy-python2/numpy-python2-1.16.5.ebuild
new file mode 100644
index 000000000000..caad08decf1d
--- /dev/null
+++ b/dev-python/numpy-python2/numpy-python2-1.16.5.ebuild
@@ -0,0 +1,169 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="7"
+
+PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs
+
+MY_PN="numpy"
+DOC_PV="1.16.4"
+
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="https://www.numpy.org"
+SRC_URI="
+	mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_PN}-${PV}.zip
+	doc? (
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip -> numpy-html-${DOC_PV}.zip
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf -> numpy-ref-${DOC_PV}.pdf
+		https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf -> numpy-user-${DOC_PV}.pdf
+	)"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	!<dev-python/numpy-1.17
+	lapack? (
+		virtual/cblas
+		virtual/lapack
+	)
+"
+DEPEND="${RDEPEND}"
+
+BDEPEND="
+	app-arch/unzip
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	lapack? ( virtual/pkgconfig )
+	test? (
+		dev-python/pytest[${PYTHON_USEDEP}]
+	)
+"
+
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+PATCHES=(
+	"${FILESDIR}"/${MY_PN}-1.15.4-no-hardcode-blas.patch
+)
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	if use lapack; then
+		append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)"
+		local incdir="${EPREFIX}"/usr/include
+		local libdir="${EPREFIX}"/usr/$(get_libdir)
+		cat >> site.cfg <<-EOF || die
+			[blas]
+			include_dirs = $(pc_incdir cblas):${incdir}
+			library_dirs = $(pc_libdir cblas blas):${libdir}
+			blas_libs = $(pc_libs cblas blas)
+			[lapack]
+			library_dirs = $(pc_libdir lapack):${libdir}
+			lapack_libs = $(pc_libs lapack)
+		EOF
+	else
+		export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+	fi
+
+	export CC="$(tc-getCC) ${CFLAGS}"
+
+	append-flags -fno-strict-aliasing
+
+	# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+	# with the subtle difference that we don't want to break Darwin where
+	# -shared is not a valid linker argument
+	if [[ ${CHOST} != *-darwin* ]]; then
+		append-ldflags -shared
+	fi
+
+	# only one fortran to link with:
+	# linking with cblas and lapack library will force
+	# autodetecting and linking to all available fortran compilers
+	append-fflags -fPIC
+	if use lapack; then
+		NUMPY_FCONFIG="config_fc --noopt --noarch"
+		# workaround bug 335908
+		[[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+	fi
+
+	# don't version f2py, we will handle it.
+	sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+	# disable fuzzed tests
+	find numpy/*/tests -name '*.py' -exec sed -i \
+		-e 's:def \(.*_fuzz\):def _\1:' {} + || die
+	# very memory- and disk-hungry
+	sed -i -e 's:test_large_zip:_&:' numpy/lib/tests/test_io.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	export MAKEOPTS=-j1 #660754
+
+	local python_makeopts_jobs=""
+	python_is_python3 || python_makeopts_jobs="-j $(makeopts_jobs)"
+	distutils-r1_python_compile \
+		${python_makeopts_jobs} \
+		${NUMPY_FCONFIG}
+}
+
+python_test() {
+	distutils_install_for_testing --single-version-externally-managed \
+		--record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+	cd "${TMPDIR}" || die
+
+	"${EPYTHON}" -c "
+import numpy, sys
+r = numpy.test(label='full', verbose=3)
+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install() {
+	distutils-r1_python_install ${NUMPY_FCONFIG}
+	python_optimize
+}
+
+python_install_all() {
+	local DOCS=( THANKS.txt )
+
+	if use doc; then
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+		DOCS+=( "${DISTDIR}"/${MY_PN}-{user,ref}-${DOC_PV}.pdf )
+	fi
+
+	distutils-r1_python_install_all
+
+	# Let latest version to provide f2py link
+	rm "${ED}"/usr/bin/f2py || die
+}