gentoo resync : 14.07.2018

4 files changed, 103 insertions, 0 deletions

diff --git a/dev-python/fitsio/Manifest b/dev-python/fitsio/Manifest
new file mode 100644
index 000000000000..a4d9d4e4876a
--- /dev/null
+++ b/dev-python/fitsio/Manifest
@@ -0,0 +1,4 @@
+AUX fitsio-0.9.11-test-failures.patch 1560 BLAKE2B 3299a43eda8df89467474c51dec85af9edb8af52c93958e49834317439d440a0993ef6311002a4cddc4cde6aed42ed355dbafcf4f6ecbe98b81d60b9763c1c03 SHA512 224ae91e65d4b5f24cd64f3ab389940bfa58801822ad090966c4c570d5c9fb568588b3efa1dab73c2ebbbd0b5f802c2364fda31097811da78c09903814613c6b
+DIST fitsio-0.9.11.tar.gz 6020222 BLAKE2B a71a0a6a026999b06dce54beb48fab2f510951099788b51456a6e07057daa7c911d5a2841d5f15a397705459daf081ff91bff1014782c93cb1dd76faf0ef2e1d SHA512 751b9612fe051f128d8f5dea61e2d119409293051a130ee3e18836181637e8c8daea757a715012fd024678d00e234e8b6c0cc0c9229c2bd9a406db312e4607d7
+EBUILD fitsio-0.9.11.ebuild 944 BLAKE2B a297294453f75c5f39be1eae8d30ac23090e1ddfd4339ce382f734f64574257923515d1f11d2247533a87e2c6d98d57594114c0211270feeadb5fb01400eeb80 SHA512 bb5e7bc6d307595cd5ee9258bea43cec4213917d5efcd2e65096da7dc04fd95674a6fefed304e865e06436c2512c9ee2cd8c912228ae8718582a75a3f0c286ab
+MISC metadata.xml 930 BLAKE2B 495700f368bc6c69ed91745ec7d2847c5cca1690c454bc3b69acbf34eefbacb5b398bf7b56292dc25f2c642a91acc0e2ca054a2a578827aef3c4f95a07a75bf9 SHA512 ef4d3c9838e4e151b16febdacb9fb3b3538763dfb0c08b43ad73a9d9ecbdb275d91152b64b400aec8e3d337f08f3aa46cc166251e34142a68514135d6ae314d4
diff --git a/dev-python/fitsio/files/fitsio-0.9.11-test-failures.patch b/dev-python/fitsio/files/fitsio-0.9.11-test-failures.patch
new file mode 100644
index 000000000000..243913dc659e
--- /dev/null
+++ b/dev-python/fitsio/files/fitsio-0.9.11-test-failures.patch
@@ -0,0 +1,38 @@
+From: Ole Streicher <olebole@debian.org>
+Date: Fri, 15 Jul 2016 08:46:15 +0200
+Subject: Mark failures that are known to fail with the original cfitsio
+
+---
+ fitsio/test.py | 5 +++--
+ 1 file changed, 3 insertions(+), 2 deletions(-)
+
+diff --git a/fitsio/test.py b/fitsio/test.py
+index bafde15..49a4b3b 100644
+--- a/fitsio/test.py
++++ b/fitsio/test.py
+@@ -545,7 +545,7 @@ class TestReadWrite(unittest.TestCase):
+         try:
+             with fitsio.FITS(fname,'rw',clobber=True) as fits:
+                 # note i8 not supported for compressed!
+-                dtypes = ['u1','i1','u2','i2','u4','i4','f4','f8']
++                dtypes = ['u1','i1',     'i2','u4','i4','f4','f8']
+ 
+                 for dtype in dtypes:
+                     data = numpy.arange(5*20,dtype=dtype).reshape(5,20)
+@@ -569,7 +569,7 @@ class TestReadWrite(unittest.TestCase):
+         try:
+             with fitsio.FITS(fname,'rw',clobber=True) as fits:
+                 # note i8 not supported for compressed!
+-                dtypes = ['u1','i1','u2','i2','u4','i4','f4','f8']
++                dtypes = ['u1','i1',     'i2','u4','i4','f4','f8']
+ 
+                 for dtype in dtypes:
+                     data = numpy.arange(5*20,dtype=dtype).reshape(5,20)
+@@ -1365,6 +1365,7 @@ class TestReadWrite(unittest.TestCase):
+             if os.path.exists(fname):
+                 os.remove(fname)
+ 
++    @unittest.skip("bzip2 is not supported with debian cfitsio package")
+     def testBz2Read(self):
+         '''
+         Write a normal .fits file, run bzip2 on it, then read the bz2
diff --git a/dev-python/fitsio/fitsio-0.9.11.ebuild b/dev-python/fitsio/fitsio-0.9.11.ebuild
new file mode 100644
index 000000000000..cf3d78bf88dd
--- /dev/null
+++ b/dev-python/fitsio/fitsio-0.9.11.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{5,6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python library to read from and write to FITS files"
+HOMEPAGE="https://github.com/esheldon/fitsio"
+SRC_URI="https://github.com/esheldon/fitsio/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	>=dev-python/numpy-1.11[${PYTHON_USEDEP}]
+	sci-libs/cfitsio:0=
+"
+DEPEND="${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]
+"
+
+PATCHES=( "${FILESDIR}"/${P}-test-failures.patch )
+
+python_prepare_all() {
+	sed -e '/self.use_system_fitsio/s/False/True/' \
+		-i setup.py || die
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	distutils_install_for_testing
+	pushd "${TEST_DIR}"/ || die
+	${PYTHON} -c "import fitsio; exit(fitsio.test.test())" || die
+	popd > /dev/null || die
+}
diff --git a/dev-python/fitsio/metadata.xml b/dev-python/fitsio/metadata.xml
new file mode 100644
index 000000000000..b7f5bc4ce9ac
--- /dev/null
+++ b/dev-python/fitsio/metadata.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-astronomy@gentoo.org</email>
+    <name>Gentoo Astronomy Project</name>
+  </maintainer>
+  <longdescription lang="en">
+    Fitsio provides an easy to use object-oriented API including
+    providing a Numpy interface to FITS files read from CFITSIO. It
+    allows direct access to the columns of a FITS binary table which can
+    be useful for reading large fits files. Compared to astropy.io.fits,
+    this package is closer to the underlying cfitsio library.
+    Fitsio also exposes a microlanguage (implemented in CFITSIO) for
+    making efficient SQL-like queries of tables (single tables only
+    though–no joins or anything like that).
+  </longdescription>
+  <upstream>
+    <remote-id type="github">esheldon/fitsio</remote-id>
+  </upstream>
+</pkgmetadata>