gentoo new year resync : 01.01.2021

4 files changed, 5 insertions, 331 deletions

diff --git a/dev-libs/igraph/Manifest b/dev-libs/igraph/Manifest
index 48e5b3e33bbd..6c418d00df62 100644
--- a/dev-libs/igraph/Manifest
+++ b/dev-libs/igraph/Manifest
@@ -1,9 +1,6 @@
-AUX igraph-0.7.1-unbundle.patch 8525 BLAKE2B 716137c2d7b4ffc3e29b484539867216574162dc3c55ea747c57cf24689ef3de032776f9e7f1d76cdb1c0e39bd6afd5fc3cc2e74de4209d632bdd568a8b884a4 SHA512 8b796f95044a231b2695532d158721cf48dfd266f5acfc2eec8a7f3706208190ee07eccaf83823ba9323edaef15afbca60ff7013cf0d9d7fda0ab5b0ee5e0eff
 AUX igraph-0.8.2-unbundle.patch 4755 BLAKE2B da0d8940fdddcffae07332db988a3195e3fb8d8628707191c45d7d1d37828fc4fc7ba3bb86f5fdef3f693e5d50d50e0dc504f2ff6334dd44aacaa32238ee46f8 SHA512 737ca787a729538300058307ee003cbf1b70e93bfc1e4fd5853647d033c61537bb935e6f46c1a689f4f69ad188602c71493693d45216e43f912e5c4c4757ca3c
-DIST igraph-0.7.1.tar.gz 2967134 BLAKE2B 27f0a2f51e561a3ea2e2e6d31853fe10ffd66f9f67603d77f2c0449a4c2bcd4d45c98516b526fb0f23a871ebe3db1fcf0c691551714d044124778faa147bd30f SHA512 ac7d7e3fbc6d27ae69079224881ca03db2c7e0b50d016706f3e167c614e2c9332c675d2fcd3cde12874e13a8fc402d42222308c6195afadee15152cec93f94dd
-DIST igraph-0.8.2.tar.gz 3625308 BLAKE2B b3be5a28b6507c98c88a96c4a14e6b9c45645985f5b16aaae0739412a5f26a1ccdbda3180fac5d12525b4da2f5fc3d6caad3928cd1306b151b89104bbbb5f6e8 SHA512 e1035ed22541c7d253c201da5d2f8c5ceb154a6bf4be1b41981a02d6bbe72038647bf011432e2446307e615c27aa8079d4ef2c4447c2eba3764788e26e8f790b
 DIST igraph-0.8.3.tar.gz 3636192 BLAKE2B 1a6636a074182fc859d7c2982546668b221be8a71b9a8a60404764684b7488a41450cedb75f89558f1ffe6f6dbef298057b5294495f2e7992768f5fd4e40fbd9 SHA512 a25126fd5ee7cf823b6728d02d38c8d13c8561e9f6e10372faef15e98f4381c118f3dd9f308d003d7d18ca501e7055b838711a2a62e00afba32ca929c8d765f1
-EBUILD igraph-0.7.1-r2.ebuild 1021 BLAKE2B f57456480c2b191750bda562f88503df46b4c6adaaa0d70bee3dd570d323eb7d26c355328bf40d896238f90c9b485ac35aad3b059141425f57463a7308f7b911 SHA512 6f852704fa6bcd52ae289f78115d4f21df0c1ff720cd7f5673882f17d34d5d174f8657b461a1543f9a8984b6d100cd91584279e3e3b33fde77b05bd527b65688
-EBUILD igraph-0.8.2.ebuild 1169 BLAKE2B e15a502fa48ac7f7174103cb76db131333f3635ca55ef838abf1107835d7c8adb5a91244f2a5b34cd129290252416a385259182b3b5167dcab76336acda5a91d SHA512 efa374895127874150b12119c1a81aed2d03be6e5fc9648cb0be1553f7770ab48d34c73aecc2e4fa1e21a892d1501d6e371023b07aca8b520e483d19df527524
+DIST igraph-0.8.5.tar.gz 3303252 BLAKE2B 9aa920e39a1ef76376eb9a88b6d24e2d051aa22807d4e9bbac49fd1708c59f821d2d4ec55dc96a89de84dfc3ca394e3de9f60704b7f3880a40128863b209d0d6 SHA512 eeb7a21b3a0551e47c178e568811a415e39afb2cc99be39905a15d667fa59564e83979111e1ea5d93636d5b0c7dcbed18728f03aa7ee4d83f96c45af52de8370
 EBUILD igraph-0.8.3.ebuild 1179 BLAKE2B dd1108c86b1743c3be9861b3156beea290c41d494ba54cb4f14cee9585931a95e5527c8ab128f3d2f7e4d4f4999a98ae4aa9d8c58983c4a7beffadcfc388d1b7 SHA512 25432bbd0c690c56f3bbbea48e68324bf19e245ac549cf12f9a3bf637f0dd3c9da3d6ce7f9e2bd38ffd2e52e1dc6111f94ea624d0af474b11c1056885f3bb24c
+EBUILD igraph-0.8.5.ebuild 1179 BLAKE2B dd1108c86b1743c3be9861b3156beea290c41d494ba54cb4f14cee9585931a95e5527c8ab128f3d2f7e4d4f4999a98ae4aa9d8c58983c4a7beffadcfc388d1b7 SHA512 25432bbd0c690c56f3bbbea48e68324bf19e245ac549cf12f9a3bf637f0dd3c9da3d6ce7f9e2bd38ffd2e52e1dc6111f94ea624d0af474b11c1056885f3bb24c
 MISC metadata.xml 807 BLAKE2B 9388edde0d01baaedc25d6cdf128e2f4b1df9c9894bb371fe088573bae73da4d572b89aad9dff6e77d080c1e084e31c2d2e7f0cf7c994b2b91e5d00b6ea86850 SHA512 a71270dd5c1a1c99792a623563f5efc70bdc16575f2e83296b6a04f4d2b960a73ffa4c8a696844f38d01b51af4ba0c054d59cb132c6da660dff10cd12e02777a
diff --git a/dev-libs/igraph/files/igraph-0.7.1-unbundle.patch b/dev-libs/igraph/files/igraph-0.7.1-unbundle.patch
deleted file mode 100644
index 755e749c1868..000000000000
--- a/dev-libs/igraph/files/igraph-0.7.1-unbundle.patch
+++ /dev/null
@@ -1,269 +0,0 @@
-diff --git a/configure.ac b/configure.ac
-index acf76cd..a9db7bd 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -167,7 +167,8 @@ if test "x$enable_gmp" != "xno"; then
-     AC_CHECK_HEADER([gmp.h], [
-       AC_DEFINE([HAVE_GMP], [1], [Define to 1 if you have the GMP library])
-       gmp_support=yes
--      LDFLAGS="${LDFLAGS} -lgmp"
-+      GMP_LIBS="-lgmp"
-+      AC_SUBST(GMP_LIBS)
-       PKGCONFIG_LIBS_PRIVATE="${PKGCONFIG_LIBS_PRIVATE} -lgmp"
-     ])
-   ])
-@@ -231,24 +232,16 @@ else
- fi
- 
- if test "$internal_blas" = "no"; then
--  AC_CHECK_LIB([blas], [daxpy_], [],
--     AC_CHECK_LIB([blas], [daxpy], [],
--        AC_CHECK_LIB([blas], [DAXPY_], [],
--           AC_CHECK_LIB([blas], [DAXPY], [],
--	      [AC_MSG_RESULT(not found, trying to use -lblas anyway.)]))))
--  LDFLAGS="${LDFLAGS} -lblas"
-+  PKG_CHECK_MODULES([BLAS],[blas])
-+  CPPFLAGS="${CPPFLAGS} ${BLAS_CFLAGS}"
-   PKGCONFIG_LIBS_PRIVATE="${PKGCONFIG_LIBS_PRIVATE} -lblas"
- else
-   AC_DEFINE([INTERNAL_BLAS], [1], [Define to 1 if you use the internal BLAS library])
- fi
- 
- if test "$internal_lapack" = "no"; then
--  AC_CHECK_LIB([lapack], [dlarnv_], [],
--     AC_CHECK_LIB([lapack], [dlarnv], [],
--        AC_CHECK_LIB([lapack], [DLARNV_], [],
--           AC_CHECK_LIB([lapack], [DLARNV], [],
--	      [AC_MSG_RESULT(not found, trying to use -llapack anyway.)]))))
--  LDFLAGS="${LDFLAGS} -llapack"
-+  PKG_CHECK_MODULES([LAPACK],[lapack])
-+  CPPFLAGS="${CPPFLAGS} ${LAPACK_CFLAGS}"
-   PKGCONFIG_LIBS_PRIVATE="${PKGCONFIG_LIBS_PRIVATE} -llapack"
- else
-   AC_DEFINE([INTERNAL_LAPACK], [1], [Define to 1 if you use the internal LAPACK library])
-@@ -258,17 +251,15 @@ if test "$internal_arpack" = "no"; then
-   if test "$tls_support" = "yes"; then
-     AC_MSG_ERROR([Thread-local storage only supported with internal ARPACK library])
-   fi
--  AC_CHECK_LIB([arpack], [dsaupd_], [],
--     AC_CHECK_LIB([arpack], [dsaupd], [],
--        AC_CHECK_LIB([arpack], [DSAUPD_], [],
--           AC_CHECK_LIB([arpack], [DSAUPD], [],
--	      [AC_MSG_RESULT(not found, trying to use -larpack anyway.)]))))
--  LDFLAGS="${LDFLAGS} -larpack"
-+  PKG_CHECK_MODULES([ARPACK],[arpack])
-+  CPPFLAGS="${CPPFLAGS} ${ARPACK_CFLAGS}"
-   PKGCONFIG_LIBS_PRIVATE="${PKGCONFIG_LIBS_PRIVATE} -larpack"
- else
-   AC_DEFINE([INTERNAL_ARPACK], [1], [Define to 1 if you use the internal ARPACK library])
- fi
- 
-+PKG_CHECK_MODULES([CS],[cxsparse])
-+
- glpk_support=no
- AC_ARG_ENABLE(glpk, AC_HELP_STRING([--disable-glpk], [Compile without the GLPK library]))
- if test "x$enable_glpk" != "xno"; then
-@@ -283,7 +274,8 @@ if test "x$enable_glpk" != "xno"; then
-         ], [
-           AC_DEFINE([HAVE_GLPK], [1], [Define to 1 if you have the GLPK library])
-           glpk_support=yes
--          LDFLAGS="${LDFLAGS} -lglpk"
-+          GLPK_LIBS="-lglpk"
-+          AC_SUBST(GLPK_LIBS)
-           PKGCONFIG_LIBS_PRIVATE="${PKGCONFIG_LIBS_PRIVATE} -lglpk"
-         ])
-       ])
-diff --git a/examples/simple/igraph_arpack_rnsolve.out b/examples/simple/igraph_arpack_rnsolve.out
-index ec38497..6603034 100644
---- a/examples/simple/igraph_arpack_rnsolve.out
-+++ b/examples/simple/igraph_arpack_rnsolve.out
-@@ -16,7 +16,7 @@
- ---
- 22.0483 0
- -21.3281 0
---3.00735 -19.2957
-+-3.00735 19.2957
- ---
- 0.373224 0.226696 0.204213 0.0473383
- -0.289145 -0.296079 -0.0479785 0.156365
-@@ -31,7 +31,7 @@
- ---
- -21.3281 0
- -12.4527 0
---3.00735 -19.2957
-+-3.00735 19.2957
- ---
- -0.226696 0.695866 -0.204213 -0.0473383
- 0.296079 0.120213 0.0479785 -0.156365
-@@ -46,7 +46,7 @@
- ---
- -3.00735 19.2957
- -3.00735 -19.2957
--12.1099 6.27293
-+12.1099 -6.27293
- ---
- 0.0768616 -0.195028 -0.152389 0.21912
- 0.147607 0.0704569 0.346547 0.125122
-diff --git a/examples/simple/igraph_layout_merge2.out b/examples/simple/igraph_layout_merge2.out
-index dfe2c22..9fe81bf 100644
---- a/examples/simple/igraph_layout_merge2.out
-+++ b/examples/simple/igraph_layout_merge2.out
-@@ -1,13 +1,13 @@
---2.73912 -2.95429
---0.479512 -4.00008
--1.96326 -3.51798
--3.65613 -1.69214
--3.95248 0.780051
--2.73912 2.95429
--0.479512 4.00008
---1.96326 3.51798
---3.65613 1.69214
---3.95248 -0.780051
-+-2.55311 -3.13964
-+-0.22007 -4.0407
-+2.19703 -3.39835
-+3.77493 -1.45795
-+3.91094 1.03935
-+2.55311 3.13964
-+0.22007 4.0407
-+-2.19703 3.39835
-+-3.77493 1.45795
-+-3.91094 -1.03935
- -1.6061 6.30088
- -4.92661 5.80435
- -3.69637 8.92826
-diff --git a/examples/simple/igraph_sparsemat2.c b/examples/simple/igraph_sparsemat2.c
-index c39d0e5..fdfd264 100644
---- a/examples/simple/igraph_sparsemat2.c
-+++ b/examples/simple/igraph_sparsemat2.c
-@@ -21,7 +21,7 @@
- 
- */
- 
--#include <cs/cs.h>
-+#include <cs.h>
- #include <igraph.h>
- #include <igraph_sparsemat.h>
- #include <igraph_blas_internal.h>
-diff --git a/examples/simple/igraph_sparsemat3.c b/examples/simple/igraph_sparsemat3.c
-index 630bf1a..b23cbe1 100644
---- a/examples/simple/igraph_sparsemat3.c
-+++ b/examples/simple/igraph_sparsemat3.c
-@@ -21,7 +21,7 @@
- 
- */
- 
--#include <cs/cs.h>
-+#include <cs.h>
- #include <igraph.h>
- #include <igraph_sparsemat.h>
- 
-diff --git a/examples/simple/igraph_sparsemat4.c b/examples/simple/igraph_sparsemat4.c
-index 4d85bde..7497faf 100644
---- a/examples/simple/igraph_sparsemat4.c
-+++ b/examples/simple/igraph_sparsemat4.c
-@@ -21,7 +21,7 @@
- 
- */
- 
--#include <cs/cs.h>
-+#include <cs.h>
- #include <igraph.h>
- #include <igraph_sparsemat.h>
- 
-diff --git a/src/Makefile.am b/src/Makefile.am
-index e7085c5..194f4a0 100644
---- a/src/Makefile.am
-+++ b/src/Makefile.am
-@@ -9,9 +9,6 @@ AM_YFLAGS = -d
- 
- lib_LTLIBRARIES         = libigraph.la
- 
--include lapack/blas.inc
--include lapack/lapack.inc
--include lapack/arpack.inc
- include plfit/plfit.inc
- 
- F2C =	f2c/abort_.c	  f2c/dolio.c	    f2c/r_sin.c\
-@@ -99,8 +96,6 @@ if INTERNAL_ARPACK
-   ARPACK_LIB = libarpack.la
- endif
- 
--include ../optional/glpk/glpk.inc
--
- if INTERNAL_GLPK
-   libglpk_la_SOURCES = 	$(GLPK)
-   libglpk_la_CFLAGS = -I$(top_srcdir)/optional/glpk
-@@ -255,7 +250,7 @@ SOURCES = 		     basic_query.c games.c cocitation.c iterators.c \
- 			     drl_layout_3d.cpp drl_graph_3d.cpp \
- 			     DensityGrid_3d.cpp \
- 			     foreign-dl-parser.y foreign-dl-lexer.l \
--			     $(CS) sparsemat.c mixing.c bigint.c bignum.c \
-+			     sparsemat.c mixing.c bigint.c bignum.c \
- 			     version.c optimal_modularity.c \
- 			     igraph_fixed_vectorlist.c separators.c \
- 			     igraph_marked_queue.c igraph_estack.c st-cuts.c \
-@@ -274,8 +269,8 @@ libigraph_la_SOURCES       = $(SOURCES) $(HEADERS_PRIVATE)
- libigraph_la_CFLAGS        = -I$(top_srcdir)/include -I$(top_builddir)/include $(WARNING_CFLAGS)
- libigraph_la_CXXFLAGS	   = -I$(top_srcdir)/include -I$(top_builddir)/include $(WARNING_CFLAGS)
- libigraph_la_LDFLAGS       = -no-undefined
--libigraph_la_LIBADD        = -lm $(XML2_LIBS) $(F2C_LIB) $(BLAS_LIB) \
--				 $(LAPACK_LIB) $(ARPACK_LIB) $(GLPK_LIB) $(PRPACK_LIB) \
-+libigraph_la_LIBADD        = -lm $(XML2_LIBS) $(F2C_LIB) $(BLAS_LIBS) $(GMP_LIBS) \
-+				 $(LAPACK_LIBS) $(ARPACK_LIBS) $(GLPK_LIBS) $(PRPACK_LIB) $(CS_LIBS) \
- 				 $(PLFIT_LIB)
- 
- if INTERNAL_GLPK
-diff --git a/src/sparsemat.c b/src/sparsemat.c
-index f96d022..6990c91 100644
---- a/src/sparsemat.c
-+++ b/src/sparsemat.c
-@@ -23,7 +23,7 @@
- 
- #include "config.h"
- 
--#include "cs/cs.h"
-+#include "cs.h"
- 
- #include "igraph_sparsemat.h"
- #include "igraph_error.h"
-diff --git a/tests/Makefile.am b/tests/Makefile.am
-index 6da83b2..c0b82d6 100644
---- a/tests/Makefile.am
-+++ b/tests/Makefile.am
-@@ -13,7 +13,7 @@ $(srcdir)/package.m4: $(top_srcdir)/configure.ac
- 	  echo 'm4_define([AT_PACKAGE_BUGREPORT], [@PACKAGE_BUGREPORT@])'; \
- 	} >$(srcdir)/package.m4
- 
--EXTRA_DIST += package.m4
-+#EXTRA_DIST += package.m4
- 
- TESTSUITE_AT = \
- 	testsuite.at \
-diff --git a/tests/mt.at b/tests/mt.at
-index 050974a..9558d6f 100644
---- a/tests/mt.at
-+++ b/tests/mt.at
-@@ -29,5 +29,5 @@ AT_CLEANUP
- AT_SETUP([Thread-safe ARPACK:])
- AT_KEYWORDS([thread-safe ARPACK])
- AT_COMPILE_CHECK([simple/tls2.c], [simple/tls2.out], [], [internal], 
--                 [-lpthread])
-+                 [-lpthread $(${PKG_CONFIG} --libs arpack)])
- AT_CLEANUP
-diff --git a/tests/types.at b/tests/types.at
-index f80a6a2..29ac739 100644
---- a/tests/types.at
-+++ b/tests/types.at
-@@ -133,7 +133,7 @@ AT_CLEANUP
- AT_SETUP([Sparse matrix, multiplications (igraph_sparsemat_t): ])
- AT_KEYWORDS([sparse matrix igraph_sparsemat_t])
- AT_COMPILE_CHECK([simple/igraph_sparsemat2.c], [simple/igraph_sparsemat2.out],
--                 [], [INTERNAL], [-lblas])
-+                 [], [INTERNAL], [$(${PKG_CONFIG} --libs blas)])
- AT_CLEANUP
- 
- AT_SETUP([Sparse matrix, indexing (igraph_sparsemat_t): ])
--- 
-2.0.0
-
diff --git a/dev-libs/igraph/igraph-0.7.1-r2.ebuild b/dev-libs/igraph/igraph-0.7.1-r2.ebuild
deleted file mode 100644
index b920276602c3..000000000000
--- a/dev-libs/igraph/igraph-0.7.1-r2.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools toolchain-funcs
-
-DESCRIPTION="Creating and manipulating undirected and directed graphs"
-HOMEPAGE="http://www.igraph.org/"
-SRC_URI="http://www.igraph.org/nightly/get/c/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0/0"
-KEYWORDS="~amd64 ~x86"
-IUSE="debug gmp"
-
-RDEPEND="
-	dev-libs/libxml2
-	>=sci-libs/arpack-3
-	virtual/blas
-	virtual/lapack
-	>=sci-libs/cxsparse-3
-	sci-mathematics/glpk
-	gmp? ( dev-libs/gmp:0 )"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_configure() {
-	tc-export PKG_CONFIG
-	econf \
-		$(use_enable gmp) \
-		$(use_enable debug) \
-		--disable-static \
-		--disable-tls \
-		--with-external-arpack \
-		--with-external-blas \
-		--with-external-lapack \
-		--with-external-f2c \
-		--with-external-glpk
-}
-
-src_install() {
-	default
-
-	# no static archives
-	find "${D}" -name '*.la' -delete || die
-}
diff --git a/dev-libs/igraph/igraph-0.8.2.ebuild b/dev-libs/igraph/igraph-0.8.5.ebuild
index fbacf2931bef..186bd9a51133 100644
--- a/dev-libs/igraph/igraph-0.8.2.ebuild
+++ b/dev-libs/igraph/igraph-0.8.5.ebuild
@@ -15,17 +15,17 @@ KEYWORDS="~amd64 ~x86"
 IUSE="debug"
 
 RDEPEND="
-	dev-libs/gmp:0
+	dev-libs/gmp:0=
 	dev-libs/libxml2
 	sci-libs/arpack
 	sci-libs/cxsparse
-	sci-mathematics/glpk
+	sci-mathematics/glpk:=
 	virtual/blas
 	virtual/lapack"
 DEPEND="${RDEPEND}"
 BDEPEND="virtual/pkgconfig"
 
-PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
+PATCHES=( "${FILESDIR}"/${PN}-0.8.2-unbundle.patch )
 
 src_prepare() {
 	default