summaryrefslogtreecommitdiff
path: root/sci-libs/cbflib/files/cbflib-0.9.3.3-unbundle.patch
blob: ef24c4b94b223a1cb5e9091327ee7156622268e0 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
 CMakeLists.txt | 118 +++------------------------------------------------------
 1 file changed, 6 insertions(+), 112 deletions(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 75054d6..15bab99 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -279,7 +279,7 @@ project (CBFlib C CXX Fortran)
 enable_testing()
 set (CBF_CMAKE_DEBUG "ON")
 
-set(CMAKE_C_FLAGS "-Wall -fno-strict-aliasing")
+set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -fno-strict-aliasing")
 
 #
 #  User setable parameters
@@ -530,42 +530,6 @@ find_package(ZLIB)
 
 
 
-#Load external packages in build directory at cmake time
-add_subdirectory(${CBF__EXTERNAL_PACKAGES}  "${CBF__EXT_PKG}")
-
-find_file(CBF_EXT_PKG_BLD_RUNNING cbf_ext_pkg_build_running "${CBF__EXT_PKG}")
-if (${CBF_EXT_PKG_BLD_RUNNING} STREQUAL "CBF_EXT_PKG_BLD_RUNNING-NOTFOUND")
-  file(WRITE "${CBF__EXT_PKG}/cbf_ext_pkg_build_running" "cbf_ext_pkg_build_running")
-  CBF_DEBUG_MESSAGE("CMAKE_COMMAND:        ${CMAKE_COMMAND}")
-  CBF_DEBUG_MESSAGE("CBFlib_SOURCE_DIR:    ${CBFlib_SOURCE_DIR} ")
-  execute_process(
-    COMMAND ${CMAKE_COMMAND} ${CBFlib_SOURCE_DIR}
-    RESULT_VARIABLE CBF_BUILD_RESULT)
-  CBF_DEBUG_MESSAGE("CBF_BUILD_RESULT: ${CBF_BUILD_RESULT}")
-  execute_process(
-    COMMAND ${CMAKE_COMMAND} --build ${CBFlib_BINARY_DIR} --target HDF5
-    RESULT_VARIABLE CBF_BUILD_RESULT)
-  CBF_DEBUG_MESSAGE("CBF_BUILD_RESULT: ${CBF_BUILD_RESULT}")
-  execute_process(
-    COMMAND ${CMAKE_COMMAND} --build ${CBFlib_BINARY_DIR} --target TIFF
-    RESULT_VARIABLE CBF_BUILD_RESULT)
-  CBF_DEBUG_MESSAGE("CBF_BUILD_RESULT: ${CBF_BUILD_RESULT}")
-  file(REMOVE "${CBF__EXT_PKG}/cbf_ext_pkg_build_running")
-endif (${CBF_EXT_PKG_BLD_RUNNING} STREQUAL "CBF_EXT_PKG_BLD_RUNNING-NOTFOUND")
-
-
-file(GLOB CBF_HDF5_LIBRARY_PATH "${CMAKE_CURRENT_BINARY_DIR}/lib/*hdf5*")
-CBF_DEBUG_MESSAGE( "CBF_HDF5_LIBRARY_PATH:  ${CBF_HDF5_LIBRARY_PATH}")
-file(GLOB CBF_TIFF_LIBRARY_PATH "${CMAKE_CURRENT_BINARY_DIR}/lib/*tif*")
-CBF_DEBUG_MESSAGE( "CBF_TIFF_LIBRARY_PATH: ${CBF_TIFF_LIBRARY_PATH}")
-
-if ("|${CBF_HDF5_LIBRARY_PATH}|" STREQUAL "||" OR "|${CBF_TIFF_LIBRARY_PATH}|" STREQUAL "||")
-  MESSAGE(STATUS "Must build external packages in ${CBF__EXT_PKG}")
-  MESSAGE(STATUS "Then rerun cmake")
-  MESSAGE(WARNING "Finishing run to make Makefiles")
-endif ("|${CBF_HDF5_LIBRARY_PATH}|" STREQUAL "||" OR "|${CBF_TIFF_LIBRARY_PATH}|" STREQUAL "||")
-
-
 #
 # Data Directories
 #
@@ -579,35 +543,6 @@ set(CBF_DATAURLBASE	"http://downloads.sf.net/cbflib")
 set(CBF_DATAURLI  "${CBF_DATAURLBASE}/CBFlib_${CBF_VERSION}_Data_Files_Input.tar.gz")
 set(CBF_DATAURLO  "${CBF_DATAURLBASE}/CBFlib_${CBF_VERSION}_Data_Files_Output.tar.gz")
 set(CBF_DATAURLS  "${CBF_DATAURLBASE}/CBFlib_${CBF_VERSION}_Data_Files_Output_Sigs_Only.tar.gz")
-#
-# Load and unpack the Data Files
-#
-CBF_LOAD_TARBALL(${CBF__DATA} ${CBF_DATADIRI} ${CBF_DATAURLI})
-CBF_LOAD_TARBALL(${CBF__DATA} ${CBF_DATADIRO} ${CBF_DATAURLO})
-CBF_LOAD_TARBALL(${CBF__DATA} ${CBF_DATADIRS} ${CBF_DATAURLS})
-#
-# Verify the checksums
-#
-file(GLOB CBF_DATADIRI_FILES "${CBF_DATADIRI}/*")
-file(GLOB CBF_DATADIRO_FILES "${CBF_DATADIRO}/*")
-foreach(loop_file ${CBF_DATADIRI_FILES} )
-  if (NOT "${loop_file}" MATCHES "[*.]md5")
-    file(MD5 "${loop_file}" loop_file_md5)
-    file(STRINGS "${loop_file}.md5" loop_file_md5_orig LIMIT_COUNT 1)
-    if (NOT ("${loop_file_md5}" STREQUAL "${loop_file_md5_orig}"))
-      message(WARNINH "loop_file: ${loop_file}:|${loop_file_md5}|${loop_file_md5_orig}|")
-    endif (NOT ("${loop_file_md5}" STREQUAL "${loop_file_md5_orig}"))
-  endif (NOT "${loop_file}" MATCHES "[*.]md5")
-endforeach(loop_file)
-foreach(loop_file ${CBF_DATADIRO_FILES} )
-  if (NOT "${loop_file}" MATCHES "[*.]md5")
-    file(MD5 "${loop_file}" loop_file_md5)
-    file(STRINGS "${loop_file}.md5" loop_file_md5_orig LIMIT_COUNT 1)
-    if (NOT ("${loop_file_md5}" STREQUAL "${loop_file_md5_orig}"))
-      message(WARNING "loop_file: ${loop_file}:|${loop_file_md5}|${loop_file_md5_orig}|")
-    endif (NOT ("${loop_file_md5}" STREQUAL "${loop_file_md5_orig}"))
-  endif (NOT "${loop_file}" MATCHES "[*.]md5")
-endforeach(loop_file)
 
 
 #
@@ -775,7 +710,7 @@ add_library(cbf_shared SHARED  ${CBF_C_SOURCES})
 set_target_properties(cbf_shared PROPERTIES OUTPUT_NAME "cbf")
 set_target_properties(cbf_shared PROPERTIES LINKER_LANGUAGE C)
 set_target_properties(cbf_shared PROPERTIES SOVERSION "${CBF_APIVERSION}")
-target_link_libraries(cbf_shared ${CBF_HDF5_LIBRARY_PATH})
+target_link_libraries(cbf_shared hdf5)
 
 #
 # Build the static and shared IMG libraries
@@ -791,7 +726,7 @@ set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CBFlib_BINARY_DIR}/solib")
 add_library(img_shared SHARED  ${CBF__EXAMPLES}/img.c)
 set_target_properties(img_shared PROPERTIES OUTPUT_NAME "img")
 set_target_properties(img_shared PROPERTIES LINKER_LANGUAGE C)
-target_link_libraries(img_shared ${CBF_HDF5_LIBRARY_PATH})
+target_link_libraries(img_shared hdf5 m )
 
 
 #
@@ -829,26 +764,6 @@ target_link_libraries(fcb_shared ${CBF_HDF5_LIBRARY_PATH})
 #
 #  C and C++ examples
 #
-CBF_ADD_C_EXAMPLE(convert_image "${CBF__EXAMPLES}" "" "img_static")
-CBF_ADD_C_EXAMPLE(convert_minicbf "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(makecbf "${CBF__EXAMPLES}" "" "img_static")
-CBF_ADD_C_EXAMPLE(adscimg2cbf "${CBF__EXAMPLES}" "${CBF__EXAMPLES}/adscimg2cbf_sub.c" "")
-CBF_ADD_C_EXAMPLE(cbf2adscimg "${CBF__EXAMPLES}" "${CBF__EXAMPLES}/cbf2adscimg_sub.c" "")
-CBF_ADD_C_EXAMPLE(cbf_tail "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(changtestcompression "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(img2cif "${CBF__EXAMPLES}" "" "img_static")
-CBF_ADD_C_EXAMPLE(cif2cbf "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(cbf2nexus "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(minicbf2nexus "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(cbf_template_t "${CBF__DECTRIS_EXAMPLES}" "" "")
-CBF_ADD_CXX_EXAMPLE(testcell "${CBF__EXAMPLES}" "" "")
-CBF_ADD_CXX_EXAMPLE(sauter_test "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(sequence_match "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(tiff2cbf "${CBF__EXAMPLES}" "${CBF__EXT_PKG}/${CBF_TIFF}/libtiff/tif_sprint.c" "${CBF_TIFF_LIBRARY_PATH}")
-CBF_ADD_C_EXAMPLE(testulp "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(testhdf5 "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(testtree "${CBF__EXAMPLES}" "" "")
-CBF_ADD_C_EXAMPLE(testalloc "${CBF__EXAMPLES}" "" "")
 
 
 
@@ -876,26 +791,9 @@ target_link_libraries(test_xds_binary     fcb_static)
 #
 # install
 #
-install (TARGETS makecbf DESTINATION bin)
-install (TARGETS img2cif DESTINATION bin)
-install (TARGETS cif2cbf DESTINATION bin)
-install (TARGETS adscimg2cbf DESTINATION bin)
-install (TARGETS cbf2adscimg DESTINATION bin)
-install (TARGETS changtestcompression DESTINATION bin)
-install (TARGETS convert_image DESTINATION bin)
-install (TARGETS convert_minicbf DESTINATION bin)
-install (TARGETS minicbf2nexus DESTINATION bin)
-install (TARGETS cbf_template_t DESTINATION bin)
-install (TARGETS testcell DESTINATION bin)
-install (TARGETS sauter_test DESTINATION bin)
-install (TARGETS sequence_match DESTINATION bin)
-install (TARGETS tiff2cbf DESTINATION bin)
-install (TARGETS cbf_static DESTINATION lib)
-install (TARGETS cbf_shared DESTINATION lib)
-install (TARGETS fcb_static DESTINATION lib)
-install (TARGETS fcb_shared DESTINATION lib)
-install (TARGETS img_static DESTINATION lib)
-install (TARGETS img_shared DESTINATION lib)
+install (TARGETS cbf_shared DESTINATION lib${LIB_SUFFIX})
+install (TARGETS fcb_shared DESTINATION lib${LIB_SUFFIX})
+install (TARGETS img_shared DESTINATION lib${LIB_SUFFIX})
 install (DIRECTORY ${CBF__INCLUDE}/ DESTINATION include/cbflib FILES_MATCHING PATTERN "*.h")
 install (DIRECTORY ${CBF__BIN_INCLUDE}/* DESTINATION include/cbflib FILES_MATCHING PATTERN "*.h")
 
@@ -914,10 +812,6 @@ endif ()
 #
 # tests  -- to be extended
 #
-add_test(NAME cbftest_makecbf
-  COMMAND ${CMAKE_COMMAND}
-    -DCMD1=$<TARGET_FILE:makecbf> -DARG11=${CBF_DATADIRI}/example.mar2300 -DARG12=makecbf.cbf
-    -P ${CMAKE_CURRENT_SOURCE_DIR}/runcommands.cmake)
 add_test(cbftest_testalloc ${VALGRIND_COMMAND} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/testalloc)
 add_test(cbftest_testhdf5 ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/testhdf5)
 add_test(cbftest_testtree ${VALGRIND_COMMAND} ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/testtree)