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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit flag-o-matic toolchain-funcs
DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="https://github.com/stamatak/standard-RAxML"
SRC_URI="https://github.com/stamatak/standard-RAxML/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
S="${WORKDIR}/standard-RAxML-${PV}"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="cpu_flags_x86_sse3 +threads"
# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
PATCHES=( "${FILESDIR}"/${P}-makefile.patch )
src_configure() {
use cpu_flags_x86_sse3 &&
append-cppflags -D__SIM_SSE3 &&
append-cflags -msse3
use threads &&
append-cppflags -D_USE_PTHREADS &&
append-cflags -pthread
tc-export CC
}
src_compile() {
emake -f Makefile.gcc
}
src_install() {
dobin raxmlHPC
}
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