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--- a/src/Makefile
+++ b/src/Makefile
@@ -1,27 +1,18 @@
-PRGS = baseml codeml basemlg mcmctree pamp evolver yn00 chi2
-CC = cc # cc, gcc, cl
+PRGS = baseml basemlg codeml evolver pamp mcmctree infinitesites yn00 chi2
-CFLAGS = -O3
+CFLAGS += -Wno-unused-result
#CFLAGS = -fast
-LIBS = -lm # -lM
+LDLIBS = -lm
all : $(PRGS)
-baseml : baseml.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ baseml.c tools.c $(LIBS)
-basemlg : basemlg.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ basemlg.c tools.c $(LIBS)
-codeml : codeml.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ codeml.c tools.c $(LIBS)
-evolver : evolver.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ evolver.c tools.c $(LIBS)
-pamp : pamp.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ pamp.c tools.c $(LIBS)
-mcmctree : mcmctree.c tools.c treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ mcmctree.c tools.c $(LIBS)
- $(CC) $(CFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.c $(LIBS)
-yn00: yn00.c tools.c paml.h
- $(CC) $(CFLAGS) -o $@ yn00.c tools.c $(LIBS)
-chi2 : chi2.c
- $(CC) $(CFLAGS) -o $@ chi2.c $(LIBS)
+baseml: tools.o paml.h
+basemlg: tools.o paml.h
+codeml: tools.o paml.h
+evolver: tools.o paml.h
+pamp: tools.o paml.h
+mcmctree: tools.o paml.h
+infinitesites: tools.o paml.h
+ $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) -DINFINITESITES mcmctree.c -o infinitesites tools.o $(LDLIBS)
+yn00: tools.o paml.h
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