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https://github.com/abacus-gene/paml/pull/46
--- a/src/Makefile
+++ b/src/Makefile
@@ -9,39 +9,39 @@ LIBS = -lm # -lM
all : $(PRGS)
baseml : baseml.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ baseml.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ baseml.o tools.o $(LIBS)
basemlg : basemlg.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ basemlg.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ basemlg.o tools.o $(LIBS)
codeml : codeml.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ codeml.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ codeml.o tools.o $(LIBS)
evolver : evolver.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ evolver.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ evolver.o tools.o $(LIBS)
pamp : pamp.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ pamp.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ pamp.o tools.o $(LIBS)
mcmctree : mcmctree.o tools.o treesub.c treespace.c paml.h
- $(CC) $(CFLAGS) -o $@ mcmctree.c tools.o $(LIBS)
- $(CC) $(CFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ mcmctree.c tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o infinitesites -D INFINITESITES mcmctree.c tools.o $(LIBS)
yn00: yn00.o tools.o paml.h
- $(CC) $(CFLAGS) -o $@ yn00.o tools.o $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ yn00.o tools.o $(LIBS)
chi2 : chi2.o
- $(CC) $(CFLAGS) -o $@ chi2.c $(LIBS)
+ $(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ chi2.c $(LIBS)
tools.o : paml.h tools.c
- $(CC) $(CFLAGS) -c tools.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c tools.c
baseml.o : paml.h baseml.c treesub.c treespace.c
- $(CC) $(CFLAGS) -c baseml.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c baseml.c
basemlg.o : paml.h basemlg.c treesub.c
- $(CC) $(CFLAGS) -c basemlg.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c basemlg.c
codeml.o : paml.h codeml.c treesub.c treespace.c
- $(CC) $(CFLAGS) -c codeml.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c codeml.c
evolver.o: evolver.c treesub.c treespace.c
- $(CC) $(CFLAGS) -c evolver.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c evolver.c
mcmctree.o : paml.h mcmctree.c treesub.c treespace.c
- $(CC) $(CFLAGS) -c mcmctree.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c mcmctree.c
pamp.o : paml.h pamp.c treesub.c treespace.c
- $(CC) $(CFLAGS) -c pamp.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c pamp.c
yn00.o : paml.h yn00.c
- $(CC) $(CFLAGS) -c yn00.c
+ $(CC) $(CPPFLAGS) $(CFLAGS) -c yn00.c
clean :
-rm *.o $(PRGS)
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