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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DISTUTILS_EXT=1
DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( pypy3 python3_{10..13} )
PYTHON_REQ_USE="threads(+)"
inherit distutils-r1 prefix pypi
DESCRIPTION="Hierarchical datasets for Python"
HOMEPAGE="
https://www.pytables.org/
https://github.com/PyTables/PyTables/
https://pypi.org/project/tables/
"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~loong ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="+cpudetection examples test"
RESTRICT="!test? ( test )"
DEPEND="
app-arch/bzip2:0=
app-arch/lz4:0=
>=app-arch/zstd-1.0.0:=
>=dev-libs/c-blosc-1.11.1:0=
>=dev-libs/c-blosc2-2.11.0:=
dev-libs/lzo:2=
>=dev-python/numpy-1.19.0:=[${PYTHON_USEDEP}]
>=sci-libs/hdf5-1.8.4:=
"
RDEPEND="
${DEPEND}
>=dev-python/numexpr-2.6.2[${PYTHON_USEDEP}]
dev-python/packaging[${PYTHON_USEDEP}]
cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] )
"
BDEPEND="
>=dev-python/cython-0.21[${PYTHON_USEDEP}]
virtual/pkgconfig
cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] )
test? (
${RDEPEND}
)
"
python_prepare_all() {
local PATCHES=(
# https://github.com/PyTables/PyTables/pull/1176
"${FILESDIR}/${P}-numpy-2.patch"
# https://github.com/PyTables/PyTables/commit/4a1b480e7e3758cf2cf06354ec5720020db16ce7
# https://github.com/PyTables/PyTables/commit/424784895b0fb15ad06707ce60f9829cef4f11e2
"${FILESDIR}/${P}-py313.patch"
)
rm -r c-blosc/{blosc,internal-complibs} || die
# part of https://github.com/PyTables/PyTables/commit/4a1b480e7e3758cf2cf06354ec5720020db16ce7
# (warning: do it *before* patching, so it doesn't modify
# the added function)
find -name '*.py' -exec \
sed -i -e 's:unittest[.]makeSuite:make_suite:' {} + || die
distutils-r1_python_prepare_all
sed -i -e '/blosc2/d' pyproject.toml || die
hprefixify -w '/prefixes =/' setup.py
export PYTABLES_NO_EMBEDDED_LIBS=1
export USE_PKGCONFIG=TRUE
}
python_test() {
cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
"${EPYTHON}" tables/tests/test_all.py -v || die
}
python_install_all() {
distutils-r1_python_install_all
if use examples; then
dodoc -r contrib examples
docompress -x /usr/share/doc/${PF}/{contrib,examples}
fi
}
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