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Diffstat (limited to 'sci-chemistry/mm-align/metadata.xml')
| -rw-r--r-- | sci-chemistry/mm-align/metadata.xml | 26 |
1 files changed, 0 insertions, 26 deletions
diff --git a/sci-chemistry/mm-align/metadata.xml b/sci-chemistry/mm-align/metadata.xml deleted file mode 100644 index 03c48e987ffb..000000000000 --- a/sci-chemistry/mm-align/metadata.xml +++ /dev/null @@ -1,26 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> -MM-align is an algorithm for structurally aligning multiple-chain -protein-protein complexes. The algorithm is built on a heuristic -iteration of a modified Needleman-Wunsch dynamic programming (DP) -algorithm, with the alignment score specified by the inter-complex residue -distances. The multiple chains in each complex are first joined, in every -possible order, and then simultaneously aligned with cross-chain alignments -prevented. The alignments of interface residues are enhanced by an -interface-specific weighting factor. An optimal alignment between two complexes, -as well as the overall TM-score, will be reported for each comparison. -What is the difference between TM-align and MM-align? TM-align is for aligning -monomer protein structures while MM-align is designed for aligning -multiple-chain protein complex structures. Although one can still use TM-align -to align protein complexes after manually joining the chains, this will lead -to suboptimal alignments with unphysical cross alignments. Therefore, the -best result will be obtained if one uses TM-align to monomer structures and -MM-align for multimer structures. -</longdescription> -</pkgmetadata> |