diff options
Diffstat (limited to 'sci-chemistry/gromacs/files')
| -rw-r--r-- | sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch | 25 | ||||
| -rw-r--r-- | sci-chemistry/gromacs/files/gromacs-2021-nblib.patch | 53 |
2 files changed, 25 insertions, 53 deletions
diff --git a/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch b/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch new file mode 100644 index 000000000000..c94fc5598f91 --- /dev/null +++ b/sci-chemistry/gromacs/files/gromacs-2021-musl-stdint.patch @@ -0,0 +1,25 @@ +From 8a38303c52fbca07c850e0c4cd03a783aabf9e49 Mon Sep 17 00:00:00 2001 +From: Paul Bauer <paul.bauer.q@gmail.com> +Date: Mon, 21 Feb 2022 09:53:46 +0100 +Subject: [PATCH] Fix missing includes for musl libc + +Fixes #4404 +--- + src/gromacs/math/vectypes.h | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/src/gromacs/math/vectypes.h b/src/gromacs/math/vectypes.h +index d4d5211d11..bd9d31de20 100644 +--- a/src/gromacs/math/vectypes.h ++++ b/src/gromacs/math/vectypes.h +@@ -40,6 +40,7 @@ + + #include <cassert> + #include <cmath> ++#include <cstdint> + + #include <algorithm> + #include <type_traits> +-- +2.35.1 + diff --git a/sci-chemistry/gromacs/files/gromacs-2021-nblib.patch b/sci-chemistry/gromacs/files/gromacs-2021-nblib.patch deleted file mode 100644 index 67ea6f6f63c8..000000000000 --- a/sci-chemistry/gromacs/files/gromacs-2021-nblib.patch +++ /dev/null @@ -1,53 +0,0 @@ -From 5771842a06f483ad52781f4f2cdf5311ddb5cfa1 Mon Sep 17 00:00:00 2001 -From: Alexey Shvetsov <alexxyum@gmail.com> -Date: Fri, 23 Apr 2021 13:15:10 +0300 -Subject: [PATCH 1/2] Allow to build and install nblib without GMX TESTS - enabled - -Without it you'll get error like this: - - CMake Error at api/nblib/CMakeLists.txt:79 (add_dependencies): - Cannot add target-level dependencies to non-existent target "tests". - - The add_dependencies works for top-level logical targets created by the - add_executable, add_library, or add_custom_target commands. If you want to - add file-level dependencies see the DEPENDS option of the add_custom_target - and add_custom_command commands. - -Signed-off-by: Alexey Shvetsov <alexxyum@gmail.com> ---- - api/nblib/CMakeLists.txt | 18 ++++++++++-------- - 1 file changed, 10 insertions(+), 8 deletions(-) - -diff --git a/api/nblib/CMakeLists.txt b/api/nblib/CMakeLists.txt -index a2ce06596e..51211c3d70 100644 ---- a/api/nblib/CMakeLists.txt -+++ b/api/nblib/CMakeLists.txt -@@ -76,14 +76,16 @@ add_custom_target(nblib-tests - ) - # Ensure that "make tests" builds all nblib tests so the top-level - # "make check" will work. --add_dependencies(tests nblib-tests) -- --# this allows all nblib tests to be run with "make check-nblib" --add_custom_target(check-nblib -- COMMAND ${CMAKE_CTEST_COMMAND} --output-on-failure -R NbLib -- COMMENT "Running nblib tests" -- USES_TERMINAL VERBATIM) --add_dependencies(check-nblib nblib-tests) -+if (BUILD_TESTING) -+ add_dependencies(tests nblib-tests) -+ -+ # this allows all nblib tests to be run with "make check-nblib" -+ add_custom_target(check-nblib -+ COMMAND ${CMAKE_CTEST_COMMAND} --output-on-failure -R NbLib -+ COMMENT "Running nblib tests" -+ USES_TERMINAL VERBATIM) -+ add_dependencies(check-nblib nblib-tests) -+endif() - - set(NBLIB_MAJOR 0) - set(NBLIB_MINOR 1) --- -2.31.1 - |