diff options
Diffstat (limited to 'sci-chemistry/cyana/files')
| -rw-r--r-- | sci-chemistry/cyana/files/2.1-exec.patch | 77 | ||||
| -rw-r--r-- | sci-chemistry/cyana/files/2.1-expire.patch | 15 | ||||
| -rw-r--r-- | sci-chemistry/cyana/files/2.1-typo.patch | 13 | ||||
| -rw-r--r-- | sci-chemistry/cyana/files/2.1-xiar.patch | 16 |
4 files changed, 0 insertions, 121 deletions
diff --git a/sci-chemistry/cyana/files/2.1-exec.patch b/sci-chemistry/cyana/files/2.1-exec.patch deleted file mode 100644 index 28cd88d3eee6..000000000000 --- a/sci-chemistry/cyana/files/2.1-exec.patch +++ /dev/null @@ -1,77 +0,0 @@ -diff --git a/cyana b/cyana -index 4f746cf..a7ff060 100755 ---- a/cyana -+++ b/cyana -@@ -45,16 +45,13 @@ shift `expr $optind - 1` - - if [ "$h" ]; then usage=1; fi - if [ "$usage" ]; then -- echo "Usage: $prog -hctx parameters ..." -+ echo "Usage: $prog -hS parameters ..." - echo - echo " -h help" - echo " -c command command to start program (must contain \$exefile)" - echo " -S run in safe mode, i.e. within one directory" -- echo " -t system explicit system type" -- echo " -x display name of executable without executing it" - exit 2 - fi --if [ "$c" ]; then cmd="$c"; fi - sys=$t - mode=$x - safe=$S -@@ -65,23 +62,6 @@ safe=$S - eval ${PROG}ARG='$*' - export ${PROG}ARG - -- --# ------ Set library name ------ -- --f=$0 --if [ `echo $f | sed 's,^/.*,+,'` != "+" ]; then f=`which $0`; fi --odir=`pwd` --while [ "`ls -l $f | awk '{ print substr($1,1,1) }'`" = "l" ]; do -- l=`ls -l $f | awk '{ i = NF; print $i }'` -- cd `dirname $f`; cd `dirname $l`; l=`pwd`/`basename $l` -- f=$l --done --cd `dirname $f` --libdir=`pwd | sed 's,/src/'${prog}'$,,'` --cd $odir --eval ${PROG}LIB=$libdir --export ${PROG}LIB -- - if [ "$safe" ]; then - CYANAINIT=initsafe; export CYANAINIT - fi -@@ -89,29 +69,4 @@ fi - - # ------ Start the program ------ - --if [ -d $libdir/src/$prog ]; then -- exe=$libdir/src/$prog/$exe --else -- exe=$libdir/$exe --fi --if [ "$sys" = "" ]; then -- sys=`$libdir/etc/identify` -- files="$exe.$sys* $exe.gnu $exe.*" --else -- files=$exe.$sys --fi --for exefile in $files; do -- if [ -x $exefile ]; then -- if [ "$mode" ]; then -- echo $exefile; exit 0 -- else -- if [ "`echo $cmd | grep -c '\$exefile'`" -gt 0 ]; then -- eval exec $cmd -- else -- eval exec $cmd $exefile -- fi -- fi -- fi --done --echo "No executable found in \"`dirname $exe`\"." --exit 1 -+exec cyana diff --git a/sci-chemistry/cyana/files/2.1-expire.patch b/sci-chemistry/cyana/files/2.1-expire.patch deleted file mode 100644 index e18008286f68..000000000000 --- a/sci-chemistry/cyana/files/2.1-expire.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- src/inclan/unix.for.orig 2011-01-05 14:56:46.572193759 +0100 -+++ src/inclan/unix.for 2011-01-05 14:57:27.833627375 +0100 -@@ -206,11 +206,8 @@ - end if - if (iwbeg.lt.0) then - iwbeg=igttim -- iexpir=(julday(12,31,2010)-julday(1,1,1970))*24*3600 -- if (iwbeg.gt.iexpir) call fatmsg ('License expired.') -+ iexpir=iwbeg+100 - j=(iexpir-iwbeg)/(24*3600) -- if (j.lt.1000) -- * call wrnmsg ('License expires in '//plural(j,'day')//'.') - end if - iwall=igttim-iwbeg - c print *,'iwall = ',iwall,iwbeg,idat,itim
\ No newline at end of file diff --git a/sci-chemistry/cyana/files/2.1-typo.patch b/sci-chemistry/cyana/files/2.1-typo.patch deleted file mode 100644 index 3f011a9b2c28..000000000000 --- a/sci-chemistry/cyana/files/2.1-typo.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/src/cyana/putpro.f b/src/cyana/putpro.f -index d4080f9..4490225 100644 ---- a/src/cyana/putpro.f -+++ b/src/cyana/putpro.f -@@ -66,7 +66,7 @@ c ------------------------------------------------------ BMRB header - * ' _Mol_residue_sequence', - * ';' - do i=1,nr,20 -- write (iunit,'(20A1))') (rcode(rnam(j)),j=i,min(nr,i+19)) -+ write (iunit,'(20A1)') (rcode(rnam(j)),j=i,min(nr,i+19)) - end do - - write (iunit,'(A)') diff --git a/sci-chemistry/cyana/files/2.1-xiar.patch b/sci-chemistry/cyana/files/2.1-xiar.patch deleted file mode 100644 index e8393253d7f6..000000000000 --- a/sci-chemistry/cyana/files/2.1-xiar.patch +++ /dev/null @@ -1,16 +0,0 @@ - src/inclan/Makefile | 2 +- - 1 files changed, 1 insertions(+), 1 deletions(-) - -diff --git a/src/inclan/Makefile b/src/inclan/Makefile -index fc5a8bf..482d48f 100644 ---- a/src/inclan/Makefile -+++ b/src/inclan/Makefile -@@ -35,7 +35,7 @@ clean: - - inclan.a: $(OBJS) - rm -f $@ -- ar rc $@ $(OBJS) -+ $(AR) rc $@ $(OBJS) - if [ "$(RANLIB)" ]; then $(RANLIB) $@; fi - - inclan.o: inclan.for |