diff options
Diffstat (limited to 'sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch')
-rw-r--r-- | sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch | 50 |
1 files changed, 0 insertions, 50 deletions
diff --git a/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch b/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch deleted file mode 100644 index 126a709385db..000000000000 --- a/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch +++ /dev/null @@ -1,50 +0,0 @@ -* Add prefix in Makefiles, not the configure script -* Use AC_SEARCH_LIBS instead of AC_CHECK_LIB, - as it is more flexible and helps us with LAPACK -* Use correct ZLIB_CFLAGS instead of non-existent ZLIB_CPPFLAGS - ---- a/configure.ac -+++ b/configure.ac -@@ -34,7 +34,7 @@ - [--with-pmdir=DIR], - [install Perl modules in DIR]), - [PMDIR=${withval}], -- [PMDIR='${prefix}'/"$pmdir_relative_path"]) -+ [PMDIR="$pmdir_relative_path"]) - - AC_SUBST([PMDIR]) - -@@ -73,9 +73,9 @@ - [pca=${enableval}], - [pca=no]) - --if test "x${pca}" = "xyes" ; then -- AC_CHECK_LIB(lapack, dgeev_) --fi -+AS_IF([test "x${pca}" = "xyes"],[ -+ AC_SEARCH_LIBS([dgeev_], [lapack]) -+]) - - # Generate output. - AC_CONFIG_FILES([Makefile ---- a/src/cpp/Makefile.am -+++ b/src/cpp/Makefile.am -@@ -1,6 +1,6 @@ - bin_PROGRAMS = vcftools - --vcftools_CPPFLAGS = $(ZLIB_CPPFLAGS) -+vcftools_CPPFLAGS = $(ZLIB_CFLAGS) - vcftools_LDADD = $(ZLIB_LIBS) - - vcftools_SOURCES = \ ---- a/src/perl/Makefile.am -+++ b/src/perl/Makefile.am -@@ -24,7 +24,7 @@ - vcf-tstv \ - vcf-validator - --pmdir = $(PMDIR) -+pmdir = $(exec_prefix)/$(PMDIR) - - dist_pm_DATA = \ - FaSlice.pm \ |