1 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/newick-utils/newick-utils-1.6-r2.ebuild b/sci-biology/newick-utils/newick-utils-1.6-r2.ebuild
new file mode 100644
index 000000000000..5d5cfa360ccb
--- /dev/null
+++ b/sci-biology/newick-utils/newick-utils-1.6-r2.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit autotools flag-o-matic
+
+DESCRIPTION="Tools for processing phylogenetic trees"
+HOMEPAGE="https://web.archive.org/web/20120206012743/http://cegg.unige.ch/newick_utils"
+SRC_URI="https://web.archive.org/web/20120126210029if_/http://cegg.unige.ch/pub/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="xml"
+
+DEPEND="
+	xml? ( dev-libs/libxml2 )"
+RDEPEND="
+	${DEPEND}
+	!dev-games/libnw"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-deduplicate-libnw.patch
+	"${FILESDIR}"/${P}-fno-common.patch
+)
+
+src_prepare() {
+	default
+	eautoreconf
+}
+
+src_configure() {
+	# -Werror=lto-type-mismatch
+	# https://bugs.gentoo.org/862279
+	# https://github.com/tjunier/newick_utils/issues/34
+	filter-lto
+
+	econf \
+		--disable-static \
+		--without-guile \
+		--without-lua \
+		$(use_with xml libxml)
+}
+
+src_install() {
+	default
+	find "${ED}" -name '*.la' -delete || die
+}