diff options
Diffstat (limited to 'sci-biology/muscle/files/3.8.31-make.patch')
| -rw-r--r-- | sci-biology/muscle/files/3.8.31-make.patch | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/sci-biology/muscle/files/3.8.31-make.patch b/sci-biology/muscle/files/3.8.31-make.patch new file mode 100644 index 000000000000..7c0e7308df54 --- /dev/null +++ b/sci-biology/muscle/files/3.8.31-make.patch @@ -0,0 +1,26 @@ +diff --git a/src/mk b/src/mk +index 475d25a..d4b7e83 100755 +--- a/src/mk ++++ b/src/mk +@@ -5,17 +5,14 @@ ObjNames='aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln + rm -f *.o muscle.make.stdout.txt muscle.make.stderr.txt + for CPPName in $CPPNames + do +- echo $CPPName >> /dev/tty +- g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt ++ echo "${CXX} ${CXXFLAGS} -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o" ++ ${CXX} ${CXXFLAGS} -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o + done + + LINK_OPTS= + if [ `uname -s` == Linux ] ; then + LINK_OPTS=-static + fi +-g++ $LINK_OPTS $ENV_LINK_OPTS -g -o muscle $ObjNames >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt +-tail muscle.make.stderr.txt + +-strip muscle +-ls -lh muscle +-sum muscle ++echo "${CXX} ${LDFLAGS} -o muscle $ObjNames" ++${CXX} ${LDFLAGS} -o muscle $ObjNames |