diff options
Diffstat (limited to 'sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild')
-rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild | 31 |
1 files changed, 14 insertions, 17 deletions
diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild index 1d3cf1171d76..5424e942a7f7 100644 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild +++ b/sci-biology/glimmerhmm/glimmerhmm-3.0.1-r1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=4 +EAPI=7 -inherit eutils toolchain-funcs +inherit toolchain-funcs MY_P=GlimmerHMM @@ -13,27 +13,22 @@ SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" LICENSE="Artistic" SLOT="0" -IUSE="" KEYWORDS="amd64 x86" -src_unpack() { - unpack ${A} - mv GlimmerHMM ${P} -} +S="${WORKDIR}/${MY_P}" -src_prepare() { - sed \ - -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/libexec/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \ - -i "${S}/train/trainGlimmerHMM" || die +PATCHES=( + "${FILESDIR}"/${PV}-gentoo.patch + "${FILESDIR}"/${PN}-3.0.1-fix-data-path.patch +) - epatch "${FILESDIR}"/${PV}-gentoo.patch +src_configure() { tc-export CC CXX } src_compile() { - emake -C "${S}/sources" - emake -C "${S}/train" + emake -C sources + emake -C train } src_install() { @@ -41,8 +36,10 @@ src_install() { insinto /usr/share/${PN}/lib doins train/*.pm + insinto /usr/share/${PN}/models - doins -r trained_dir/* + doins -r trained_dir/. + exeinto /usr/libexec/${PN}/training_utils doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} |